PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540138.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 425aa    MW: 46499.7 Da    PI: 5.2103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540138.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.2e-22101332128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          GfrF+P+ ee+v++yL + ++g++ + +e  i+++++y +eP++L +     +++++ + +f ++ ++ +    + +r++  g W ++ +
  KN540138.1_FGP003  10 ELGFRFNPSPEEVVTYYLPRLIAGHPPKDTEScIHRANVYGAEPRELAAqfapVARSSNGDRFFLTECKRIK---GKVSRVAGGGSWVSQTS 98 
                        57***********************95554444**************8435543333333556666665543...5899999*****98765 PP

                NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k++++++g +vg  k + f     ++g++tdW+m+ey+l
  KN540138.1_FGP003  99 -KDIKNREGIKVGEAKNFRFK----KDGTNTDWLMEEYHL 133
                        .999999*************7....78999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-227151IPR003441NAC domain
PROSITE profilePS5100525.1789151IPR003441NAC domain
PfamPF023651.4E-1312133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MATNLHLLLE LGFRFNPSPE EVVTYYLPRL IAGHPPKDTE SCIHRANVYG AEPRELAAQF  60
APVARSSNGD RFFLTECKRI KGKVSRVAGG GSWVSQTSKD IKNREGIKVG EAKNFRFKKD  120
GTNTDWLMEE YHLCLRQASD LEPVLCRVYV SPRAAKDSAA HQESAALTPQ EPAPPLAHAP  180
APAPIQEPAA LPRQELAPAP PRLEAVITQQ QATMKMGVPV ITQQQAPPLK RPAPPVPSPP  240
SAKKIRGPVS ASPVARQSCV AASAPPPWCV PPPPRPAPPS RRVMAPLPPY PMDPFETPPS  300
PHAPRPDPFE PPPSPDPPIQ SYAIDPHIQS YAMDPFEQPP SPYAPHGVDD MDEFTRSLEA  360
QLEEADGDEI AAATVAPPMA QNVAPDDDMD EYTRSLEAQL EEADGDDKID DDELMRLTRK  420
FSKFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540138.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448790.0AL844879.5 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619209.10.0proteoglycan 4
TrEMBLA0A0D3HTQ20.0A0A0D3HTQ2_9ORYZ; Uncharacterized protein
STRINGOBART12G09720.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.12e-13NAC domain containing protein 77