PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540100.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 26424.7 Da PI: 5.7833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.7e-19 | 24 | 88 | 1 | 65 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrd 65 lppGfrFhPtdeelv++yL++kv + + v i+evd++++ePw+Lp++++ +ekew f d KN540100.1_FGP010 24 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWIFHKVGD 88 79*************************888.455***************88888999998876544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-20 | 15 | 85 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.401 | 24 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-8 | 25 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV 60 DLNRCEPWEL PEAARMGEKE WIFHKVGDQY SKLMMMKSPA SYYLPVSHHH PSSIFHDLPP 120 VPFPNPSLVP FHHDHLPTSF VHPPLLQHSH ANSKNSSSNN GGFVFPNEPN TTNSSDNHTA 180 CNGAMAAAAF PSFSCATVTG KGGPPAQLGV NAGQQEPPPP TWMDVYLQHS GFIYEMGPPA 240 VPRGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-13 | 18 | 89 | 9 | 79 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540100.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006049 | 0.0 | AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648828.1 | 2e-93 | protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | I1QK25 | 1e-98 | I1QK25_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0177600.1 | 2e-99 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 9e-30 | NAC family protein |