PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540075.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 88aa MW: 9808.17 Da PI: 8.5174 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.0002 | 13 | 55 | 14 | 54 |
HHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas....kapskKlsKaeiLekAveYIksL 54 d+i + +++L++llP++s ++++ +K L++ + YIksL KN540075.1_FGP002 13 DEITELISKLQSLLPESSrrrgATSGSPATK--LLKEMCSYIKSL 55 67999***********877775333333444..588888999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-6 | 13 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-6 | 13 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSGRRASGRI TDDEITELIS KLQSLLPESS RRRGATSGSP ATKLLKEMCS YIKSLHREVD 60 DLSERLSELM ATMDSNSPQA DIIRSLLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540075.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837942 | 1e-138 | CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613962.1 | 7e-54 | transcription factor ILI3-like | ||||
Swissprot | A2X9L8 | 8e-32 | ILI5_ORYSI; Transcription factor ILI5 | ||||
Swissprot | Q6YUX0 | 8e-32 | ILI5_ORYSJ; Transcription factor ILI5 | ||||
TrEMBL | A0A0D3HDF7 | 2e-52 | A0A0D3HDF7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BA88 | 2e-52 | A0A0E0BA88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EXJ4 | 2e-52 | A0A0E0EXJ4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QYU4 | 2e-52 | A0A0E0QYU4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z729 | 2e-52 | A2Z729_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QUB1 | 2e-52 | I1QUB1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8LNC7 | 2e-52 | Q8LNC7_ORYSJ; BHLH family protein, putative, expressed | ||||
STRING | OGLUM10G09100.1 | 3e-53 | (Oryza glumipatula) | ||||
STRING | OMERI10G06270.1 | 3e-53 | (Oryza meridionalis) | ||||
STRING | ORUFI10G09690.1 | 3e-53 | (Oryza rufipogon) | ||||
STRING | OS10T0403800-00 | 3e-53 | (Oryza sativa) | ||||
STRING | ORGLA10G0079400.1 | 3e-53 | (Oryza glaberrima) | ||||
STRING | OBART10G09290.1 | 3e-53 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 3e-27 | bHLH family protein |