 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KN540046.1_FGP004 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YC |
| Protein Properties |
Length: 335aa MW: 36922.6 Da PI: 4.847 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN540046.1_FGP004 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 75.6 | 6.7e-24 | 31 | 129 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90
+++fw ie+++ ++ lP++r+k+i++a e m+sa++P++++k celf+ el lr+w+ a++ +r+ + +dia+a+t t+ +
KN540046.1_FGP004 31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIRAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYH 122
78899876122555555566779********************************************************************* PP
NF-YC 91 flvdivp 97
fl ++v
KN540046.1_FGP004 123 FLANVVR 129
**99885 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN 60
IIRAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES 120
YHFLANVVRG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP 180
PIGQSDAQHT TSTHVLMMQG ESIHKASKEK SPLNEVMVPT NKVGMTNSSY AVPNGGGATS 240
SKVAIDSPKG ETAQVFSSQL ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI 300
SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC097278 | 0.0 | AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence. |
| GenBank | AK288961 | 0.0 | AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
