PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540018.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 117aa MW: 12963.9 Da PI: 4.6901 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.9 | 1.1e-15 | 54 | 106 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49 lppGfrFhP+deelvv+yL +k++g + ++ +vd++k+ePw+Lp KN540018.1_FGP008 54 LPPGFRFHPRDEELVVDYLYHKLSGGGgageFYGGVAMVDVDLNKCEPWELPG 106 79**********************99976543332359*************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-16 | 42 | 107 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.526 | 54 | 117 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-6 | 55 | 102 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAKAVRRVDF EKFVFKLSEQ SSVPDVISKT FLQGELTIKS IDTMSLISMM EANLPPGFRF 60 HPRDEELVVD YLYHKLSGGG GAGEFYGGVA MVDVDLNKCE PWELPGTDQI ISCKTSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540018.1_FGP008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 1e-115 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633392.1 | 5e-35 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-14 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0P0WF82 | 1e-44 | A0A0P0WF82_ORYSJ; Os04g0619000 protein | ||||
STRING | OS04T0619000-01 | 2e-45 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-20 | NAC family protein |