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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539990.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 27549.3 Da PI: 7.2727 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.9 | 9.6e-41 | 2 | 116 | 12 | 128 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 +elv +yL+++++g+ ++ +i+e+d ++++PwdLp+++ +++ewyfF++rd+ky++g+r++ra++sgyWkatg dk+vl+ +g++ g+k KN539990.1_FGP003 2 SELVAHYLCPRAAGRAAPV-PIIAELDPHRHDPWDLPHRALFGRREWYFFTPRDRKYPNGSRPHRAAASGYWKATGADKPVLH-NGRTAGIK 91 59**************999.88***************87778999**************************************.999***** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfy+g+ p+g+kt+W+mheyrl KN539990.1_FGP003 92 KALVFYHGKPPRGVKTEWIMHEYRL 116 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.08 | 1 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-18 | 2 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-51 | 3 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSELVAHYLC PRAAGRAAPV PIIAELDPHR HDPWDLPHRA LFGRREWYFF TPRDRKYPNG 60 SRPHRAAASG YWKATGADKP VLHNGRTAGI KKALVFYHGK PPRGVKTEWI MHEYRLAKKG 120 GAAAAAGAGA LRLDDWVLCR LYNKKNEWEK MQSKKDEAAA MAAAQSWGEA RTPESEVVDS 180 DAFPEMDYSL PAASFGDALL PKEEARDDDW LMGMSLDDLQ GLGSLLQADD LSMLAPPPAK 240 AEPLGAPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-76 | 3 | 150 | 27 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539990.1_FGP003 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028182 | 0.0 | AB028182.1 Oryza sativa mRNA for OsNAC3 protein, complete cds. | |||
GenBank | AK073667 | 0.0 | AK073667.1 Oryza sativa Japonica Group cDNA clone:J033052E11, full insert sequence. | |||
GenBank | AP004572 | 0.0 | AP004572.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0668C05. | |||
GenBank | AP005516 | 0.0 | AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645028.1 | 1e-155 | NAC domain-containing protein 67 | ||||
Swissprot | Q7EZT1 | 1e-156 | NAC67_ORYSJ; NAC domain-containing protein 67 | ||||
TrEMBL | A0A0E0Q5Q8 | 1e-154 | A0A0E0Q5Q8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YJK0 | 1e-154 | A2YJK0_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q952 | 1e-154 | I1Q952_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI07G07590.1 | 1e-155 | (Oryza rufipogon) | ||||
STRING | OS07T0225300-01 | 1e-155 | (Oryza sativa) | ||||
STRING | ORGLA07G0064400.1 | 1e-155 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 3e-63 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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