PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539879.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 442aa    MW: 50148.9 Da    PI: 8.2621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539879.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06170194123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+ s+srk++L+rH+ tH
  KN539879.1_FGP006 170 FSCHvdGCPFSYSRKDHLNRHLLTH 194
                        89*********************99 PP
2zf-C2H2110.0013199224123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        + Cp   C++ F+ k n +rH +  H
  KN539879.1_FGP006 199 FACPveGCNRKFTIKGNIQRHVQEmH 224
                        78*******************98877 PP
3zf-C2H220.51.3e-06236260123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp  +Cgk+F+  s L++H  +H
  KN539879.1_FGP006 236 FICPeeNCGKTFKYASKLQKHEESH 260
                        78*******************9988 PP
4zf-C2H216.23e-05327351223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        +C+  dC+ sFs ksnL +H +  H
  KN539879.1_FGP006 327 RCHfkDCKLSFSKKSNLDKHVKAvH 351
                        7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551580102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.72E-7167196No hitNo description
Gene3DG3DSA:3.30.160.602.6E-9167196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016170194IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349170199IPR007087Zinc finger, C2H2
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-6197225No hitNo description
Gene3DG3DSA:3.30.160.608.4E-7197225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015199224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866199229IPR007087Zinc finger, C2H2
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-7232260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-5233262No hitNo description
PROSITE profilePS5015711.24236260IPR007087Zinc finger, C2H2
SMARTSM003550.0018236260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238260IPR007087Zinc finger, C2H2
SMARTSM003557.8268293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280270293IPR007087Zinc finger, C2H2
SMARTSM0035513296317IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.63E-7307368No hitNo description
Gene3DG3DSA:3.30.160.604.2E-5307348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.024326351IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967326356IPR007087Zinc finger, C2H2
PROSITE patternPS000280328351IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5350379IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8357383IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280359383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGGTVEGENE GTRAGLRWYP NPAPAFSNPN PLRLAYSTTN ASWFESRMRS VELGAEEGEV  60
AGGEGESKRA APPARDIRRY KCDFCSVVRS KKGLIRAHVL EHHKDEVDDL DDYLECGGGE  120
SRKEMDRDCK GGGDSYAVLT ANFPGQLIVV VSLLFWLDYF TILLHMDRPF SCHVDGCPFS  180
YSRKDHLNRH LLTHQGKLFA CPVEGCNRKF TIKGNIQRHV QEMHKDGSPC ESKKEFICPE  240
ENCGKTFKYA SKLQKHEESH VKLDYSEVIC CEPGCMKAFT NLECLKAHNK SCHQHVVCDV  300
CGTKQLKKNF KRHQRMHEGS CVTERVRCHF KDCKLSFSKK SNLDKHVKAV HEQKRPFVCG  360
FSGCDKSFSY KHVRDNHEKS SAHVYVQANF EEIDGDRPRQ AGGRKRKAIP VERLMRKRVA  420
APDDDAPACD DGTEYLRWLL SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1316729040157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1316729040157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539879.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
TrEMBLA0A0E0KXX20.0A0A0E0KXX2_ORYPU; Uncharacterized protein
STRINGOPUNC05G01460.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.29e-95transcription factor IIIA