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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539818.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 19145.2 Da PI: 10.0521 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H KN539818.1_FGP001 6 FVCEICGKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + KN539818.1_FGP001 83 WKCDKCSKKYAVHSDWKAHSKIC 105 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.65E-8 | 5 | 28 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 6 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.65E-8 | 78 | 103 | No hit | No description |
SMART | SM00355 | 160 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRGSK EAVRKKVYIC PEASCVHHDP 60 SRALGDLTGI KKHFFRKHGE KKWKCDKCSK KYAVHSDWKA HSKICGTREY KCDCGTIFSR 120 SAPSSSSLLP PSMAIALAAL PCSFLIASVL AAACAFSWHS DEQESKQPIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-21 | 79 | 120 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 3e-21 | 79 | 120 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 45 | KLKQRGSKEAVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539818.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105504 | 0.0 | AK105504.1 Oryza sativa Japonica Group cDNA clone:001-127-D09, full insert sequence. | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622202.1 | 6e-86 | protein indeterminate-domain 7 | ||||
Refseq | XP_015689076.1 | 9e-87 | PREDICTED: protein indeterminate-domain 7 | ||||
Swissprot | Q9SCQ6 | 3e-77 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0D3EQD2 | 4e-85 | A0A0D3EQD2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0C3R3 | 1e-84 | A0A0E0C3R3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FND0 | 1e-84 | A0A0E0FND0_ORYNI; Uncharacterized protein | ||||
TrEMBL | M8BTJ7 | 1e-85 | M8BTJ7_AEGTA; Zinc finger protein MAGPIE | ||||
STRING | EMT28340 | 2e-86 | (Aegilops tauschii) | ||||
STRING | OGLUM01G23770.1 | 2e-85 | (Oryza glumipatula) | ||||
STRING | ORUFI01G22710.1 | 2e-85 | (Oryza rufipogon) | ||||
STRING | OS01T0572300-01 | 2e-85 | (Oryza sativa) | ||||
STRING | ONIVA01G22710.1 | 2e-85 | (Oryza nivara) | ||||
STRING | OBART01G20150.1 | 6e-86 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 9e-67 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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