PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 230aa MW: 26226.7 Da PI: 9.7947

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539767.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.9	8.8e-23	123	184	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++++s++ r Y++Ct++ +C +kk+v+ r+a +p ++++tY +eH+++ KN539767.1_FGP001 123 KDGYQWRKYGQKNIQDSNYLRLYFKCTFSherRCAAKKQVQqRDAGEPPMFVVTYLNEHTCQ 184 7************************988899***7356789***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-25	111	187	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-22	117	186	IPR003657	WRKY domain
SMART	SM00774	7.8E-34	122	185	IPR003657	WRKY domain
Pfam	PF03106	2.4E-23	123	184	IPR003657	WRKY domain
PROSITE profile	PS50811	16.88	124	186	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAFGQDTIEQ LYRELAGGRR LSAKLQALLE GPLDRRGQKE AVDVSRELGR VFMVSLYMLK 60 PCSNSSRRPE GVTRTAPETR TDDSICLHTP ARVKRVRSEE VLVKNGREEV VTRTEIITPS 120 PYKDGYQWRK YGQKNIQDSN YLRLYFKCTF SHERRCAAKK QVQQRDAGEP PMFVVTYLNE 180 HTCQQPQAVP GTPNTAGRHL YWTVTSGRPV GRERTYQDEQ AAGRNSSCLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	9e-14	124	183	10	68	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539767.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003302	1e-157	AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBank	AP003348	1e-157	AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBank	AP014957	1e-157	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-157	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006646438.1	1e-104	PREDICTED: probable WRKY transcription factor 62
TrEMBL	A0A0D3EVL3	1e-139	A0A0D3EVL3_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FV24	1e-139	A0A0E0FV24_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N482	1e-139	A0A0E0N482_ORYRU; Uncharacterized protein
TrEMBL	A2WWF5	1e-139	A2WWF5_ORYSI; Uncharacterized protein
TrEMBL	I1NSS9	1e-139	I1NSS9_ORYGL; Uncharacterized protein
TrEMBL	Q8RUA9	1e-139	Q8RUA9_ORYSJ; WRKY transcription factor 20
STRING	ORUFI01G38670.1	1e-140	(Oryza rufipogon)
STRING	ONIVA01G40370.1	1e-140	(Oryza nivara)
STRING	ORGLA01G0291900.1	1e-140	(Oryza glaberrima)
STRING	OBART01G35350.1	1e-140	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13243	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01900.1	1e-18	WRKY DNA-binding protein 62