PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539740.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 852aa    MW: 92366.2 Da    PI: 5.0749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539740.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-0727512348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia++++ gRt++++k+ w+++l
  KN539740.1_FGP005 27 RWSKIASCLP-GRTDNEIKNVWNTHL 51
                       7*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.71E-52051No hitNo description
SuperFamilySSF466893.67E-72656IPR009057Homeodomain-like
PROSITE profilePS500906.2262751IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-112752IPR009057Homeodomain-like
SuperFamilySSF561126.43E-7627847IPR011009Protein kinase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGRSH RIWFLLRWSK IASCLPGRTD NEIKNVWNTH LKKRVSQREK  60
PGDTKKKGKA ADASDDADAH SPSSSASSST TTTTTAANNN NNSGDTAGEQ CGTSKEPENV  120
DVSFFEQDID ISDMLVDAPT EAPLLAAPMP PSPCSSSSLT TATCVGAVPD ELLDLPEIDI  180
EPEIWSIIDG YGGDEPVVSG ADGDATVPCT ASPGEEGAEW WVENLEKELG LWGPMDESLA  240
HPDPPGQAAS DKSPAATTAT KNPEEGLGEP ETGKCVQVEF AGTTADNSPA PTEVGREKSI  300
ELVGAQVDAL QGSEIADEVV VGETKHGEAR QPVESGREAP GERVVRQVEL LEAEQVRDGA  360
AIGEHARDVI VGNFAGKMLL RLFPERSRWR RCSTRQSRSQ GRTRKARVSS SVSSSKYIPT  420
PATELDAGVA GDERWSMARS ERPREVRVQD SVARPSCSLH SVAGRGFCCL IPKHTSESVS  480
LHSPAAPSVT MLKAPPTSFL SSLDPGGWRR RPFRLSPPPI SAALMTNPAY FEVGRYLGGY  540
GFMNITSYSS SQFGGLPDVA GIQNLGLGYS PEEIERLRAQ DVGEGEVNIR LYEGRVVQGP  600
LKGTEALFKV YPASRSGASE ADLMAVNELR THAFLQNDAS DICENIQFLL GAFETATGEQ  660
WLAFRDDGRY SAADYAKLTS ERKLKEQSGS ISFWNPYDRA YKLELKRYFV LKLLYGAMCG  720
LVHMHNHDRL HQSLGPSSVV LKYSSVGSGA LSDGLWRRAS AAGASTPLEK RAFGIADDMQ  780
RLLENTFRLD IYAAREYFLA DDRLSEAVDF LDLGDGAGWE LLQAMLNPDY RKRPIAEAVL  840
NHRFLTGAVL WN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539740.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684260.0AK068426.1 Oryza sativa Japonica Group cDNA clone:J013157D01, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-11myb domain protein 14