PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539693.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 498aa MW: 55129.2 Da PI: 4.3324

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539693.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.3e-07	314	362	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +rWT eE+ l++++v ++ W+ +r ++ g+t +++s+++++ KN539693.1_FGP005 314 QRWTDEEESLFYRVVYSNPPSlgknFWHFLPRALP-GKTSMELVSYYFNV 362 79************988668888******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0055	312	365	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.99E-5	314	363	IPR009057	Homeodomain-like
CDD	cd00167	2.88E-6	315	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE 60 SKIASTGLKL GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA YLADETREPD 120 YIYHNSGISA CNTSSSIPYS NLEQLIGEEN LYLPDWVTTF PGYTGDFWPA PVADQVDDID 180 SPIHDHLPRK AVAIGPDHQA DIPEWRPRIS MTVPYGSGSC ADLSYSSVST SGSAPRDEDS 240 ESDKWIKHCV IEMPSSCSVA WVGDHGRDCG CSDEGSIRCV RRHVLESREN LKRIFGEDKF 300 RELGLCEMGE DIAQRWTDEE ESLFYRVVYS NPPSLGKNFW HFLPRALPGK TSMELVSYYF 360 NVFMLRKRAQ QNRSEPLHVD SDDDEVPDEP SVTEDEDSAV ESPAHDYYVN NPMSPESEDS 420 FHEKVADSLS GLRDGPSQKP LGSNTDNPGG DADVQDESCT SFEDHNGAHG SNGVQCAEFH 480 MMLPNAALDH YSDRGACM

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MVFSHNKNSN QFDPLSYVNL SGLDADSQSV SFTDMNSRDA PSNSHVTDVG KENMLNNPEE  60
SKIASTGLKL GSPISPENFS FSSLPGSSCH LSTLDHGKRP LSDVRPFQVA YLADETREPD  120
YIYHNSGISA CNTSSSIPYS NLEQLIGEEN LYLPDWVTTF PGYTGDFWPA PVADQVDDID  180
SPIHDHLPRK AVAIGPDHQA DIPEWRPRIS MTVPYGSGSC ADLSYSSVST SGSAPRDEDS  240
ESDKWIKHCV IEMPSSCSVA WVGDHGRDCG CSDEGSIRCV RRHVLESREN LKRIFGEDKF  300
RELGLCEMGE DIAQRWTDEE ESLFYRVVYS NPPSLGKNFW HFLPRALPGK TSMELVSYYF  360
NVFMLRKRAQ QNRSEPLHVD SDDDEVPDEP SVTEDEDSAV ESPAHDYYVN NPMSPESEDS  420
FHEKVADSLS GLRDGPSQKP LGSNTDNPGG DADVQDESCT SFEDHNGAHG SNGVQCAEFH  480
MMLPNAALDH YSDRGACM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539693.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT831188	0.0	CT831188.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130N12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631894.1	0.0	uncharacterized protein LOC4333157
Refseq	XP_015631895.1	0.0	uncharacterized protein LOC4333157
TrEMBL	A0A0E0D2B9	0.0	A0A0E0D2B9_9ORYZ; Uncharacterized protein
STRING	OS03T0425800-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14431	6	6