PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539693.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 17294.2 Da PI: 5.2315 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F + L H r+H KN539693.1_FGP003 105 FVCPICSKEFGSGQALGGHKRSH 127 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 17 | 40 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.99E-9 | 17 | 39 | No hit | No description |
Pfam | PF13912 | 2.2E-5 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 17 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.99E-9 | 100 | 127 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 105 | 128 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-12 | 105 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD 60 DEGGDGKTPE LSIETSFSSA STSVSPDTMI SASTVAKTVK KPTKFVCPIC SKEFGSGQAL 120 GGHKRSHSIA GELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539693.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137999 | 1e-132 | AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence. | |||
GenBank | AK105583 | 1e-132 | AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence. | |||
GenBank | AP014959 | 1e-132 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630118.1 | 1e-55 | uncharacterized protein LOC4333158 | ||||
TrEMBL | A0A0D3FK15 | 2e-54 | A0A0D3FK15_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NWS9 | 2e-54 | A0A0E0NWS9_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PCE9 | 2e-54 | I1PCE9_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI03G22750.1 | 3e-55 | (Oryza rufipogon) | ||||
STRING | ORGLA03G0204500.1 | 3e-55 | (Oryza glaberrima) | ||||
STRING | OBART03G22030.1 | 3e-55 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-13 | C2H2-like zinc finger protein |