PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539688.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26337.2 Da    PI: 9.0732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539688.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.7e-151050242
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       ri n+ +r   f kR++g+ KKA+ELS+LC ++ +++++++
  KN539688.1_FGP004 10 RIINDAKRRAAFKKRLKGLKKKASELSTLCSVDTCLMVYGE 50
                       899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-11161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.498150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-21186IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARNKVKLQR IINDAKRRAA FKKRLKGLKK KASELSTLCS VDTCLMVYGE GEVQATEVWP  60
SVQEATRVLE RFKAMPQLDR YKKTMDLDGF IKERTDKLQE KLHKVRRDAD ESETKILLIE  120
AFYSRCAGLE DLTIEQLTSL GWMADAQLKI VNNNFQKFRE QGLLPESASL SGMNVPPYTI  180
AGYPAVEEAQ MQREGWLMNV ARGIGSLGYN GFEGSSGSAT AEPNGDMVQH LNKGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539688.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629573.11e-118agamous-like MADS-box protein AGL80
TrEMBLA0A0E0IC411e-160A0A0E0IC41_ORYNI; Uncharacterized protein
STRINGONIVA08G16460.11e-160(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-24AGAMOUS-like 80