PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539677.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 298aa    MW: 31842.6 Da    PI: 6.7576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539677.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.42e-081180170
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70
                       l pG++ +P+d+elv + L ++++g++l+l   i e+d +++  Pw+L +  +++ +e +f +k+ + +++
  KN539677.1_FGP005 11 LLPGLKLDPSDDELVGRCLLRRLQGQSLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80
                       579***************************888999987776478***743.3455678877776554332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-9482IPR003441NAC domain
SuperFamilySSF530981.04E-12155284IPR012337Ribonuclease H-like domain
PROSITE profilePS508799.488158283IPR002156Ribonuclease H domain
CDDcd062221.15E-26158279No hitNo description
PfamPF134565.0E-35159281No hitNo description
Gene3DG3DSA:3.30.420.101.9E-4160282IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQSLPL GGDILEADPL SAPPPWNLLA  60
DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGCGGG GMAFLPSIFP  120
SPPPVPRCST PLSPSSPPFQ PSRVIVRWWA PPAGWCKLNF DGSVYQDGSR RASIGGVIRG  180
CDGGVVLAFA EITEHWTVGV VEARAMIRGL RLALACFVER LVVEGDDLVL VQLIRGEETQ  240
TRIPAAMHEE ILGLLRCFAD VEVRHIYREG NSVAHTLCRQ AYVHPGLWTD CATLPAAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539677.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAC1377480.0AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.11e-108uncharacterized protein LOC112939071
TrEMBLA2Y3930.0A2Y393_ORYSI; Uncharacterized protein
TrEMBLB9FGQ20.0B9FGQ2_ORYSJ; Os05g0326500 protein
STRINGORGLA05G0101300.11e-174(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713