PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539664.1_FGP008

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1490aa MW: 161239 Da PI: 6.5388

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539664.1_FGP008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.3e-07	636	678	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ KN539664.1_FGP008 636 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 678 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-13	619	681	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	632	683	IPR017884	SANT domain
SMART	SM00717	4.8E-7	633	681	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-6	636	678	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-5	636	680	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	841	892	IPR017884	SANT domain
SMART	SM00717	6.6E-4	842	890	IPR001005	SANT/Myb domain
CDD	cd00167	0.00113	846	884	No hit	No description
SuperFamily	SSF46689	1.33E-8	846	892	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1490 aa Download sequence Send to blast
MRGSYRRSPF RGYGSDFSRN HQEHPPPPLR RSPLRSVAVP MSYDPPGDRA DRGDRDHHHR 60 VTPWRPLRRR ESRSDAADAA GAGPVPVGQA AAAAASEKDV SARSSAVAAP QVSEEEAPRK 120 KPRLGWGQGL AKYEKQKVQG PAESAEAVAE GSPTATEQKG VTHTPAPAPC ASPVAAPSPA 180 PCASPVAAPS PAPPCKSPVA EDKSCELTAN TVTESNKNIP GPDVQACNNE IPTKLDQLEG 240 DPIDSLAKVL SELVQHEDSC SGDSKRLSNV SKLLLLKESI SKELEKTELE IDSLEGELKS 300 VNVEARNRAL KDPPTAVTYA QNPSPSPVKE QGELTPSPKI SMEQDADVKG SELMEVETAQ 360 AHNAKAVSSE ESVACPGVAP GQVPAAADVI PSDPCGKTGS GIDVDIEQRE ENPCQENFNA 420 MKADGSSDLA TRPCSYRDVK YNLMDQIIAA NRSEAKKNSQ LLFKPMPADR SNLDLLASSY 480 LSSQMKNDVI IKKKHAILKN RQRFKEQILT FKFRVLRHLW KEDVRLLSVR KQRSKSHKRT 540 DQSNRSSQSG SQRQRSSNRS RLAVPAGNLS TFPITEMSGV AKKLFSEFQL KRCRNYLKMP 600 ALIVDEKEKA GAKFVSKNGL VEDPVSVEKE RALINPWIQE EKEIFMEKLA TFGKDFSKIS 660 SFLQHKTTAD CIEFYYKHHK SDSFREVKKL LDLRQQQQPA SNYLGAVSGK KWNPESNAAS 720 LDMLGVATEV AAQGLEYVNE VKKNSAKSIL RTVCGVDNST KGSEKDCVGD VSLHERESVA 780 ADVLAGICGT LSPEGMGSCI TSSADLGQKI GIISRMEHLL TPEADKNFDD DGTLSDQECE 840 VDIVDWNDDE KSSFIEAMNR YGKDFARISS YVKSKSFEQC KVFFSKARKS LGLDLIHQGA 900 ADAGFPTGDA NGGRSGTDGA CIAEMDSAIC SAQSCPKVEI DACPVSDGEI QGHNSLSDIA 960 SRQPEADRSN MPDVVDINVE EGESKAEKDC SILVDHKQLR EDTNQTSCAR IDINCPESTD 1020 KLQDIEDDVT PVNMHGDDLM ATSVEQAAAA HVESRSSLHS EGIGIDVSRI EGCSHESTIG 1080 KGGKSTPSVC LPAANGVSKE NIIHFSNMDG ASSISPAFTS NYQQSKLADP IQSKPKPLTP 1140 KDLMPVQFSS SLPDPTSICF EGIAAITTPN FEDHGNRASI ASGAKDVNMF PTFKDQSSNR 1200 HDALFSNVDG YMQQRRNNHF GTEVCGLSES TGISQSDQFT VSKFQNGRPS SLGLSNGNLG 1260 VLSTGRREEA REGLFRPCSV KTSAGNEEQQ KRPGDVKLFG QILSHQSSMQ SSGSSVHGSK 1320 SKPPSPKVDK SASSRLLSNP RERLVYSSRP PIIANLGLEE RAMRSFDHMD GRTIQPEPMV 1380 MVAKCQRPSA GVPVYSTKNG ALSVFAEFQQ PSMPPHTSDH KLLENFADLH KRNGIELLSG 1440 FQQPGRLGGA GVLVSGVSDP VAALKAQYGS GSKMLSSSND VDSWKDIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1490 aa Download sequence Send to blast

MRGSYRRSPF RGYGSDFSRN HQEHPPPPLR RSPLRSVAVP MSYDPPGDRA DRGDRDHHHR  60
VTPWRPLRRR ESRSDAADAA GAGPVPVGQA AAAAASEKDV SARSSAVAAP QVSEEEAPRK  120
KPRLGWGQGL AKYEKQKVQG PAESAEAVAE GSPTATEQKG VTHTPAPAPC ASPVAAPSPA  180
PCASPVAAPS PAPPCKSPVA EDKSCELTAN TVTESNKNIP GPDVQACNNE IPTKLDQLEG  240
DPIDSLAKVL SELVQHEDSC SGDSKRLSNV SKLLLLKESI SKELEKTELE IDSLEGELKS  300
VNVEARNRAL KDPPTAVTYA QNPSPSPVKE QGELTPSPKI SMEQDADVKG SELMEVETAQ  360
AHNAKAVSSE ESVACPGVAP GQVPAAADVI PSDPCGKTGS GIDVDIEQRE ENPCQENFNA  420
MKADGSSDLA TRPCSYRDVK YNLMDQIIAA NRSEAKKNSQ LLFKPMPADR SNLDLLASSY  480
LSSQMKNDVI IKKKHAILKN RQRFKEQILT FKFRVLRHLW KEDVRLLSVR KQRSKSHKRT  540
DQSNRSSQSG SQRQRSSNRS RLAVPAGNLS TFPITEMSGV AKKLFSEFQL KRCRNYLKMP  600
ALIVDEKEKA GAKFVSKNGL VEDPVSVEKE RALINPWIQE EKEIFMEKLA TFGKDFSKIS  660
SFLQHKTTAD CIEFYYKHHK SDSFREVKKL LDLRQQQQPA SNYLGAVSGK KWNPESNAAS  720
LDMLGVATEV AAQGLEYVNE VKKNSAKSIL RTVCGVDNST KGSEKDCVGD VSLHERESVA  780
ADVLAGICGT LSPEGMGSCI TSSADLGQKI GIISRMEHLL TPEADKNFDD DGTLSDQECE  840
VDIVDWNDDE KSSFIEAMNR YGKDFARISS YVKSKSFEQC KVFFSKARKS LGLDLIHQGA  900
ADAGFPTGDA NGGRSGTDGA CIAEMDSAIC SAQSCPKVEI DACPVSDGEI QGHNSLSDIA  960
SRQPEADRSN MPDVVDINVE EGESKAEKDC SILVDHKQLR EDTNQTSCAR IDINCPESTD  1020
KLQDIEDDVT PVNMHGDDLM ATSVEQAAAA HVESRSSLHS EGIGIDVSRI EGCSHESTIG  1080
KGGKSTPSVC LPAANGVSKE NIIHFSNMDG ASSISPAFTS NYQQSKLADP IQSKPKPLTP  1140
KDLMPVQFSS SLPDPTSICF EGIAAITTPN FEDHGNRASI ASGAKDVNMF PTFKDQSSNR  1200
HDALFSNVDG YMQQRRNNHF GTEVCGLSES TGISQSDQFT VSKFQNGRPS SLGLSNGNLG  1260
VLSTGRREEA REGLFRPCSV KTSAGNEEQQ KRPGDVKLFG QILSHQSSMQ SSGSSVHGSK  1320
SKPPSPKVDK SASSRLLSNP RERLVYSSRP PIIANLGLEE RAMRSFDHMD GRTIQPEPMV  1380
MVAKCQRPSA GVPVYSTKNG ALSVFAEFQQ PSMPPHTSDH KLLENFADLH KRNGIELLSG  1440
FQQPGRLGGA GVLVSGVSDP VAALKAQYGS GSKMLSSSND VDSWKDIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-16	594	685	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-16	594	685	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539664.1_FGP008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC129720	0.0	AC129720.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0683F12, complete sequence.
GenBank	AC134931	0.0	AC134931.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0079L11, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A2XZX7	0.0	A2XZX7_ORYSI; Uncharacterized protein
STRING	OMERI05G01950.3	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-75	MYB family protein