PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539644.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 629aa    MW: 70289.1 Da    PI: 8.331
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539644.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.71.6e-27116203190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re+++ + ++++ +r+etr+gC a+++++++++gk+++t+++ +HnH+la
  KN539644.1_FGP008 116 DFYNAYAEMVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKRGT-KEAKCPRPETRIGCPASMTIRLNTNGKYRLTEFVPNHNHQLA 203
                        6********************97766.****************9988.99**************************************97 PP
2FAR184.51.6e-26245331189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        +fY+ YA ++GF+vr+++++ +  ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a+++++++++gk++vt++++ HnH+l
  KN539644.1_FGP008 245 EFYSMYAGKIGFNVRRASMTMN-AENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLTSNGKYHVTEFVTFHNHQL 331
                        6*****************9999.5556****************9998.99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-25116203IPR004330FAR1 DNA binding domain
PfamPF031018.9E-23245331IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.843442489IPR007527Zinc finger, SWIM-type
PfamPF044346.0E-9442488IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6464491IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSSNSGGSAK EKDPENAPEL VALPLVRTLR PVHAVIDPAA DRRSAQLSWP GHVVLLPPYA  60
TWPHHVPTPP PAVNPANPQQ NGDVAAADVS PDVGCCDEKM LPKVDMLFDG EKEAYDFYNA  120
YAEMVGFFVR RSTLWTTSKN IITRRTFVCS REGFREKKRG TKEAKCPRPE TRIGCPASMT  180
IRLNTNGKYR LTEFVPNHNH QLATASTMHM LKAKKIRLKA RAVRENLVDD TVRTPEFGSE  240
DEAYEFYSMY AGKIGFNVRR ASMTMNAENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET  300
RTGCPACMVI RLTSNGKYHV TEFVTFHNHQ LGATVPSDLV ATSQSTETGQ DDGLDLVDGS  360
ADANIHRQNL IIGNTMATSL EAELQADVDG SQSTKKPPPM RVLRQASNIY TPAAFKMFER  420
EFELYMDCML YNCGEMGTIS EYRVVIEDNP KDHFVKFDSL NSMVNCSCKG FEFVGIPCRH  480
MLKVLDTRNI KDLPPQYFLK RWRKDAKSGS PNCSYSFPLD GDPQLAQTKR YNLLCRMFSI  540
AAARAATSIE TFAYMENQSS IFMDQVEQAL QTRPPDIAAM IGAHCDQTQN PIDNIVAGGL  600
HSHTNFINGP ADGSLTFQFT LGAGVLDYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539644.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675750.0AK067575.1 Oryza sativa Japonica Group cDNA clone:J013110M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647776.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA2YMN70.0A2YMN7_ORYSI; Uncharacterized protein
STRINGOS07T0563600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-24FAR1-related sequence 5