PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539644.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 866aa    MW: 96112.1 Da    PI: 8.2452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539644.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.1e-19402501198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  KN539644.1_FGP006 402 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-P 491
                        89**************************777788889***************9989999999***9.********************987.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  KN539644.1_FGP006 492 EGKLVMGFRK 501
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.102.0E-29398503IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19399501IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-22400501No hitNo description
PROSITE profilePS5086311.251402503IPR003340B3 DNA binding domain
PfamPF023627.3E-16402501IPR003340B3 DNA binding domain
SMARTSM010195.7E-21402502IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MGKTDDLLLL CWCGGVACMG LRLSPQRPRI CFNAHCKDPK SDGPRRRGWR LRNGDFAELC  60
DRCYHSFEHG GFCETFHLEV AGWRNCESCG KRLHCGCIVS VHAFVHLDAG GVECVMCARK  120
SHAAMAPSQI WSSSMHMAQN VADRKDNFVK SWRPPAGQFS SQWRQNNMWS MSTMQSDLQQ  180
RLAFEFDRPS GSEKLLPGRT FIHAHEKKFD DMHDRPTTPA GMNQIMRERY ANGHTQHTTL  240
DPTYAYTLYH REGTNPNLHD HGHHAGENDH LTGRKGVTSD PCSSVSTTFK LDSHHPSILK  300
DDPSALPAGL SPNFSSANGP KDHIRIGPTQ QQQQQMASSS LQKQFYSHSV IDNDFQAQLR  360
NGRPRMDAKA RSQLLPRYWP RITDQELQHL SGDSNSVITP LFEKMLSASD AGRIGRLVLP  420
KKCAEAYFPA ISQAEGLPLK VQDATGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  480
GDTVTFSRID PEGKLVMGFR KATNLSAEQD QPTKPANGVP PPPEANNKVP VPDSSPNAAV  540
PRPIKVNTES KSSSPVEQAT ACKIDKGALP QKEGPGTSSS SPLPVKRKAT SVGPKIKRFR  600
MDSEESMELK ITWEEAQELL RPPPKAPSIV VVDGHEFEEY EEPPILGRRT YFVTDQSGSS  660
CDSAQEINME ELGEMIPIKP GAAKKTKGKV DTDNIDVSDG LDTLANLAIL GEGESLPSQP  720
TTRHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMMRR EKRQQSEKDS  780
GVPRKREPGQ SSEPVPQSGS GAHPTSTSSP PQRADTNGEG PEDMSIDNKR TSSPVKNQID  840
LNSQPEREDE QSPKSDATRL LRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-643805042126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539644.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ED460.0A0A0E0ED46_9ORYZ; Uncharacterized protein
STRINGOMERI07G15800.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-115HSI2-like 1