PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539596.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 357aa    MW: 40042 Da    PI: 10.686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539596.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-141171991397
                        TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        + ++ +p kf+++h  +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +v vf
  KN539596.1_FGP004 117 LENMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--TVEVF 199
                        34489**********944445667899999**********..999999****************************9999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-20103204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-20104208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.365105202IPR003340B3 DNA binding domain
CDDcd100171.15E-15106199No hitNo description
SMARTSM010191.8E-6108202IPR003340B3 DNA binding domain
PfamPF023623.8E-11116199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-10279354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-8280354IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754313357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTTRSATQSG RQRQGRRCGG REGTVSWSLG GTPSTARALG VPSTTRGLAR ARNRVALCGS  60
EQLKKDVVRR DTSAIFQAGT RRVFDPGFCL ARFCTPHAGM RTKDRPRFIK LLQQEDLENM  120
KIPEKFVQQH LTETYTNNHQ NAIIVCPLGK FWRVELQREQ PDVLLRDGWA PFLAAHDLSE  180
GNILLFRYEG NMVFTVEVFL QNGCLKEYKT AALYLTDGTE GPSNAPQQSA AKVGVSPVKR  240
KRTRRIEGTC LEGPNRKSRA SPISVKVEPQ KKHVSIVSQN SFTKEMTAYS IHSLLSVRGT  300
FCSQIGLLEA CAITLKISMK KKGSWRVAFK TANTYGYING PGWRKFCLEN ELEVQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539596.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047921e-176AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149621e-176AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A0E0AC580.0A0A0E0AC58_9ORYZ; Uncharacterized protein
STRINGOS06T0632500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-13B3 family protein