PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539582.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 919aa    MW: 102801 Da    PI: 6.234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539582.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.15e-3837748620129
                NAM  20 kkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
                        k+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v+  ++++vg+k+tLvf+
  KN539582.1_FGP005 377 KRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPVIY-NSQTVGMKRTLVFH 466
                        57889999999.88**************95357788999**************************************.999*********** PP

                NAM 110 kgrapkgektdWvmheyrle 129
                         g+ p+g +tdWvm eyrle
  KN539582.1_FGP005 467 LGKPPRGDRTDWVMYEYRLE 486
                        ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030161.3E-2553308IPR004263Exostosin-like
PROSITE profilePS5100542.642357508IPR003441NAC domain
SuperFamilySSF1019412.35E-46377508IPR003441NAC domain
PfamPF023657.0E-16379485IPR003441NAC domain
PROSITE profilePS5141923.554703919No hitNo description
SMARTSM001748.1E-8732888No hitNo description
SMARTSM001760.0034733915No hitNo description
SMARTSM001758.3E-63743888No hitNo description
PRINTSPR004493.9E-20744760No hitNo description
PfamPF000719.0E-40750886IPR001806Small GTPase superfamily
Gene3DG3DSA:3.40.50.3001.8E-46750919IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.1E-37750890IPR027417P-loop containing nucleoside triphosphate hydrolase
TIGRFAMsTIGR002318.6E-17750880IPR005225Small GTP-binding protein domain
SMARTSM001731.6E-10754888No hitNo description
PRINTSPR004493.9E-20762784No hitNo description
PRINTSPR004493.9E-20828841No hitNo description
PRINTSPR004493.9E-20863885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTLDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVNV IDYTEVSIKW PASKIGPGLL EYLESIPDGR VEEMIGRGRE IRCLWVYAAD  360
TERCSAMSAI MWELQRKRKL LGKHLRCNAV SELDLYKFAP WDLPEKSSLQ SKDREWYFFC  420
PRDRKYSSGS RTNRSTEAGY WKATGKDRPV IYNSQTVGMK RTLVFHLGKP PRGDRTDWVM  480
YEYRLEDKEL SASGVKLDAC VLCKIFQKSG PGPKIGEQYG APFNEDDWNE ANGELSSFAF  540
SVPPCVLESS NGRLNTAGQQ LAVSDNIGSS LDHCSETNDK IAVGGCGTTS PSVPFDNIHT  600
QQLAEIISCF STDLLNSVSR DGSLGGGLMQ PDSTADYDND NEVSSDDGEA IFNELDELDS  660
QSDESISNHC NSCGEDLIPP TLEVLKTEQY LELNDLSFSL ADDPDPCNLL LTTNLSDQNH  720
LELETRFEQG SLVDICNTTN ATISNAACSA STVGVDFKVK MVNTGGKKLK LAIWDTAGQE  780
RFRTLTSSYY RGAQVQIDFS VYDVTRRETF TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD  840
KESERAVTKK EGIEFAREYG CLFLECSAKT KVNVEQCFEE LVLKILDTPS LLADASSGAK  900
KNIFKQKPPE ADAAASSCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x3s_A1e-4475089145182Ras-related protein Rab-18
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539582.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646460.0AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KXB70.0A0A0E0KXB7_ORYPU; Uncharacterized protein
STRINGOPUNC04G28460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP993277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.48e-63NAC domain containing protein 82