PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 535aa MW: 58487.6 Da PI: 5.0187

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539566.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	48.9	1.3e-15	80	119	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 ldDg +WrKYGqKe+++s++p++Y+rCt++ C+++++ KN539566.1_FGP004 80 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQ 119 58***************************98777999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-14	73	119	IPR003657	WRKY domain
PROSITE profile	PS50811	14.079	75	119	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-13	78	119	IPR003657	WRKY domain
SMART	SM00774	6.3E-14	80	138	IPR003657	WRKY domain
Pfam	PF03106	8.2E-13	81	123	IPR003657	WRKY domain
Hamap	MF_00469	35.643	164	466	IPR020936	Uncharacterised protein family UPF0176
SuperFamily	SSF52821	2.36E-26	277	356	IPR001763	Rhodanese-like domain
Gene3D	G3DSA:3.40.250.10	6.1E-41	287	438	IPR001763	Rhodanese-like domain
CDD	cd01518	5.98E-49	294	422	No hit	No description
SMART	SM00450	2.1E-18	297	426	IPR001763	Rhodanese-like domain
PROSITE profile	PS50206	15.891	307	429	IPR001763	Rhodanese-like domain
SuperFamily	SSF52821	2.36E-26	385	455	IPR001763	Rhodanese-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MSPAPAPPYA QVMEDMEKGK ELAAQLQGLL RDSPEAGRIV DQILHTFSRA MRALDKAAVS 60 AAGGEGTQQS SGNTVVVKNL DDGQAWRKYG QKEIQNSKHP KAYFRCTHKY DQLCTAQRQP 120 LKVEGGVGSS DQEEVLSSLT PGSSAVRGGG GGAGPFGPDQ GDVTSSLHCS YDADAFAVAG 180 MEFFKDDEVV FDLDDIMGGI ILAPEGINGS ICGTPEAVEK VLNFIQSDDR LKGLRMIQSP 240 VTPEDEAIHH GHTSQSPVGA GEDAPFRWDH VRVKLKKEIV ALGDPSVMPI KTVGKYVKPK 300 DWNALISDPD TVVIDVRNMY EIRIGKFKRA VDPCTNSFRE FPSWVDDQFQ LAASDSQPCS 360 ENNDNTIGGQ SEGLNSSEPK ELPRVAMYCT GGIRCEKASS FLLSKGFKEV YHLEGGILKY 420 LEEVPKAESL WEGECFVFDK RVSVDHGLAQ GTHKLCYGCK KPVSDEDMES PEWEYGVSCP 480 YCFATKSEEE KERARARQRQ FETWGVIGGP DKGRSPKRLE ANHAAEEPKQ VSSSV

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MSPAPAPPYA QVMEDMEKGK ELAAQLQGLL RDSPEAGRIV DQILHTFSRA MRALDKAAVS  60
AAGGEGTQQS SGNTVVVKNL DDGQAWRKYG QKEIQNSKHP KAYFRCTHKY DQLCTAQRQP  120
LKVEGGVGSS DQEEVLSSLT PGSSAVRGGG GGAGPFGPDQ GDVTSSLHCS YDADAFAVAG  180
MEFFKDDEVV FDLDDIMGGI ILAPEGINGS ICGTPEAVEK VLNFIQSDDR LKGLRMIQSP  240
VTPEDEAIHH GHTSQSPVGA GEDAPFRWDH VRVKLKKEIV ALGDPSVMPI KTVGKYVKPK  300
DWNALISDPD TVVIDVRNMY EIRIGKFKRA VDPCTNSFRE FPSWVDDQFQ LAASDSQPCS  360
ENNDNTIGGQ SEGLNSSEPK ELPRVAMYCT GGIRCEKASS FLLSKGFKEV YHLEGGILKY  420
LEEVPKAESL WEGECFVFDK RVSVDHGLAQ GTHKLCYGCK KPVSDEDMES PEWEYGVSCP  480
YCFATKSEEE KERARARQRQ FETWGVIGGP DKGRSPKRLE ANHAAEEPKQ VSSSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4f67_A	2e-50	196	448	45	247	UPF0176 protein lpg2838
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539566.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109472	0.0	AK109472.1 Oryza sativa Japonica Group cDNA clone:001-128-E12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637829.1	0.0	rhodanese-like domain-containing protein 7
Swissprot	Q1JPN0	1e-177	STR7_ARATH; Rhodanese-like domain-containing protein 7
TrEMBL	A0A0E0L107	0.0	A0A0E0L107_ORYPU; Uncharacterized protein
STRING	OPUNC05G10030.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-16	WRKY DNA-binding protein 70

Publications ? help Back to Top
Bauer M,Papenbrock J Identification and characterization of single-domain thiosulfate sulfurtransferases from Arabidopsis thaliana. FEBS Lett., 2002. 532(3): p. 427-31 [PMID:12482606] Tsakraklides G, et al. Sulfate reduction is increased in transgenic Arabidopsis thaliana expressing 5'-adenylylsulfate reductase from Pseudomonas aeruginosa. Plant J., 2002. 32(6): p. 879-89 [PMID:12492831] Bartels A,Mock HP,Papenbrock J Differential expression of Arabidopsis sulfurtransferases under various growth conditions. Plant Physiol. Biochem., 2007 Mar-Apr. 45(3-4): p. 178-87 [PMID:17408957]