PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539550.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 166aa MW: 17487.4 Da PI: 4.4143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.4e-05 | 110 | 160 | 12 | 53 |
HHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIks 53 RR+ri +++ L++l+P+ + a+++K + ++ A + I s KN539550.1_FGP001 110 RRERISERLKVLQDLVPNGTkvlatdefwPAQGGKAPELSQVKDALDAILS 160 ******************555999999999999998888888888888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAAQASSKRG MLLQREAVLY DDEPSMAPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS 60 SSSVLSFDQA AVGGGGCARQ LAFHPGGDDD DCAMWMDAAA GAMVENTSVR RERISERLKV 120 LQDLVPNGTK VLATDEFWPA QGGKAPELSQ VKDALDAILS SQHPNK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539550.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-169 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643698.1 | 6e-45 | transcription factor bHLH83 | ||||
TrEMBL | A0A0E0BVZ3 | 9e-46 | A0A0E0BVZ3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G00280.1 | 1e-46 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 9e-24 | ROOT HAIR DEFECTIVE6 |