PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539526.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 328aa    MW: 35210.6 Da    PI: 4.5983
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539526.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.5e-20111352128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          GfrF+P+ e++v++yL   v+g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    + +r++  g+W ++ 
  KN539526.1_FGP005  11 ELGFRFNPSPEQVVTYYLPCLVAGQQpKDTEGCIHSADVYGAdEPRDLAgKyapVARSSNGDRFFFTGCRRMKG---KFSRSAGGGTWVSQS 99 
                        57**********************994445556*******9869****843554334455588****9999764...7999999*****886 PP

                NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k++++++g ++g  k + f     ++g++tdW+m+ey+l
  KN539526.1_FGP005 100 S-KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135
                        6.888888*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-229154IPR003441NAC domain
PROSITE profilePS5100523.82810154IPR003441NAC domain
PfamPF023656.7E-1413135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG  60
KYAPVARSSN GDRFFFTGCR RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVAHQESAVL QPREPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PRPLAPTYPT DPFESAPLDP FEPPPAAASV TGGHHTPQPS  240
VPVPATPEQG LSLAASNSPE LDPANIGIDM DELMRYLGNT PLDGVLPSQL FVLPTNDDED  300
VELAKVLEDG LGLQGGGEKD GNGNPPLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539526.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317850.0AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318830.0AL731883.4 Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.20.0uncharacterized protein LOC107275392
TrEMBLA0A0E0BRV60.0A0A0E0BRV6_9ORYZ; Uncharacterized protein
STRINGOGLUM12G11050.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-12NAC domain containing protein 52