PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539405.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 341aa    MW: 36372.2 Da    PI: 7.4036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539405.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-55111361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL+kkv++ ++ +  +i+e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++
  KN539405.1_FGP012  11 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAIAEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDI 101
                        79*************************999.67***************8888899************************************* PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg+kktLvfy+grapkgek+ Wvmheyrl
  KN539405.1_FGP012 102 FR-GKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 136
                        **.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-606141IPR003441NAC domain
PROSITE profilePS5100553.85911160IPR003441NAC domain
PfamPF023656.7E-3012136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEHQGQAGMD LPPGFRFHPT DEELITHYLA KKVADARFAA LAIAEADLNK CEPWDLPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATESG YWKATGKDKD IFRGKALVGM KKTLVFYTGR  120
APKGEKSGWV MHEYRLHGKL HAAALGLLPG KPASSKVHER TVFKKSLVEV GAAGGKKAAV  180
VTMEMARGGS TSSSVADEIA MSSVVLPPLM DMSGAGAGAV DPATTAHVTC FSNALEGQFF  240
NPTAVVHGHG GGDSSPFMAS FTQYGQLHHG VSLVQLLESC NGYGGLVDMA ASGSQLQPAA  300
CGGERERLSA SQDTGLTSDV NPEISSSSGQ KFDHEAALWG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5121366140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539405.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281810.0AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds.
GenBankAK0617450.0AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence.
GenBankAK1046260.0AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence.
GenBankCT8301070.0CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence.
GenBankDQ5206410.0DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633922.10.0NAC domain-containing protein 92
RefseqXP_015633924.10.0NAC domain-containing protein 92
TrEMBLA0A0D9ZLQ50.0A0A0D9ZLQ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H1Q20.0A0A0E0H1Q2_ORYNI; Uncharacterized protein
TrEMBLI1PLX80.0I1PLX8_ORYGL; Uncharacterized protein
STRINGOGLUM04G14830.20.0(Oryza glumipatula)
STRINGONIVA04G13100.20.0(Oryza nivara)
STRINGORGLA04G0119700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.26e-80NAC domain containing protein 80