PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539403.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 350aa MW: 39511.3 Da PI: 8.5046

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539403.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74	3.3e-23	64	142	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ KN539403.1_FGP013 64 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVE 142 6*****************************************999.********************9989999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	64	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR LQAATGDYTP WLGQEFASEH 60 EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT 120 RTGCHANLVI RRKNDTSKYE VEGRKVQADT TLEFSSRYEY LCPVYVRLVA RASECEESYR 180 VLDQCSVELG KKIEEILQKQ TSIDASAPQS DIEDVTISLS ANGTDNESER ALDYSSSTRP 240 KRRKKKGRNA KSQRKSCIEK GLQKTKKVQP EQSPIQYTML DAAQPGNVLF QFLRPSTAFK 300 FCNAEVFYLK SYAIPPWTVV ITDSSSKDYD YGYFGLENLE FTIVHASAMF

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR LQAATGDYTP WLGQEFASEH  60
EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT  120
RTGCHANLVI RRKNDTSKYE VEGRKVQADT TLEFSSRYEY LCPVYVRLVA RASECEESYR  180
VLDQCSVELG KKIEEILQKQ TSIDASAPQS DIEDVTISLS ANGTDNESER ALDYSSSTRP  240
KRRKKKGRNA KSQRKSCIEK GLQKTKKVQP EQSPIQYTML DAAQPGNVLF QFLRPSTAFK  300
FCNAEVFYLK SYAIPPWTVV ITDSSSKDYD YGYFGLENLE FTIVHASAMF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539403.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121855	0.0	AK121855.1 Oryza sativa Japonica Group cDNA clone:J033102F24, full insert sequence.
GenBank	AP004847	0.0	AP004847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1298_H07.
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627310.1	2e-86	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_015627311.1	2e-86	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_015688624.1	3e-86	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	B9F0F7	1e-131	B9F0F7_ORYSJ; Uncharacterized protein
STRING	OGLUM02G19970.1	1e-111	(Oryza glumipatula)
STRING	ONIVA07G07180.1	1e-111	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-18	FAR1 family protein