PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539396.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 269aa    MW: 28873 Da    PI: 5.4256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539396.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20128177255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+ +++g
  KN539396.1_FGP009 128 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 177
                        8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-32128185IPR001471AP2/ERF domain
PfamPF008471.3E-13128177IPR001471AP2/ERF domain
PROSITE profilePS5103225.277128185IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23128186IPR016177DNA-binding domain
SMARTSM003804.1E-38128191IPR001471AP2/ERF domain
PRINTSPR003671.7E-11129140IPR001471AP2/ERF domain
CDDcd000185.29E-29131185No hitNo description
PRINTSPR003671.7E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGGNQEYMIR FDGHIDDASP SSATAEPPPP LPPPRPFAGR AISAEREHSV IVATLLHVIS  60
GYRTPPPEVF PAARAEVCGV CGMDQCLGCE FFAGESGVVS FDGAEKVAAV APAGAAAGQR  120
RRRKKKNKYR GVRQRPWGKW AAEIRDPRRA VRKWLGTFDT AEEAARAYDR AAVEFRGPRA  180
KLNFPFPEQL SAHDDSNGDA SAAAKSDTLS PSPRSADADE QVEHTGWPQG GGGGGGGETG  240
DQLWEGLQDL MQLDEGGLSW FPQSSDSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21125186264ATERF1
3gcc_A7e-21125186264ATERF1
5wx9_A1e-201281921479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539396.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043990.0AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649367.11e-156ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0E0AWI61e-155A0A0E0AWI6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IDA21e-155A0A0E0IDA2_ORYNI; Uncharacterized protein
TrEMBLA3BU221e-155A3BU22_ORYSJ; Uncharacterized protein
STRINGOGLUM08G18720.11e-155(Oryza glumipatula)
STRINGONIVA08G19930.11e-155(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-23redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]