PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539390.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17070 Da PI: 4.2244 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WTteEde+l +++++ G g+W++ ++ g KN539390.1_FGP007 14 KGPWTTEEDEKLMEYIQKNGHGSWRALPKLAG 45 79************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.271 | 9 | 42 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.15E-8 | 11 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-8 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.60E-5 | 16 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTTE EDEKLMEYIQ KNGHGSWRAL PKLAGSFLAG QLPNIQMHGS 60 SLFDQPAAII NDTNHNQDYA ASTGEREIIN GATKTTTTTT LLPEGSLPPL ADYPTISNLG 120 DVYSTPSCDG NITEFPLLPD ALFDELMRDY VSPSSSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539390.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 1e-172 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623220.1 | 6e-64 | transcription factor MYB41 | ||||
TrEMBL | A0A0E0CRN1 | 4e-63 | A0A0E0CRN1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G30660.1 | 3e-64 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 7e-24 | myb domain protein 9 |