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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KN539371.1_FGP002 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 301aa MW: 32936.4 Da PI: 4.4049 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN539371.1_FGP002 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 117.6 | 1.2e-36 | 5 | 101 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL++ ++ e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+
KN539371.1_FGP002 5 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEehcRIGYeEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGR 95
69****************************.9***************9445633332566******************************** PP
NAM 89 dkevls 94
dk++ +
KN539371.1_FGP002 96 DKAINE 101
**9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MESCVPPGFR FHPTDEELVG YYLRKKVASQ KIDLDVIRDV DLYRIEPWDL QEEHCRIGYE 60
EQSEWYFFSY KDRKYPTGTR TNRATMTGFW KATGRDKAIN EILVSYEEEG WVVCRAFKKR 120
TMQPPRSSIG AWEPSYSYHD PAVFVGGGEH FKQEAAAELD GVAAAAGANA FLRYSTRLAE 180
LPQLESPPLP SQGSQAASAV VDGEEDNADS SRRPGGGGGA AVTTDWRAFD KFVASQLSPE 240
EQHTCRATDD DDMAALLLLD GGGQEDDAGR WLGSAGLLSA VAADATTDCG LGTSCVPGDI 300
N
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC092389 | 0.0 | AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence. |
| GenBank | AC113948 | 0.0 | AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence. |
| GenBank | AK106313 | 0.0 | AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | JN634073 | 0.0 | JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds. |
