PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539371.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 301aa    MW: 32936.4 Da    PI: 4.4049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539371.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.61.2e-365101194
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        +ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL++   ++   e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+
  KN539371.1_FGP002   5 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEehcRIGYeEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGR 95 
                        69****************************.9***************9445633332566******************************** PP

                NAM  89 dkevls 94 
                        dk++ +
  KN539371.1_FGP002  96 DKAINE 101
                        **9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-373119IPR003441NAC domain
PROSITE profilePS5100534.0365165IPR003441NAC domain
PfamPF023653.7E-176112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLRKKVASQ KIDLDVIRDV DLYRIEPWDL QEEHCRIGYE  60
EQSEWYFFSY KDRKYPTGTR TNRATMTGFW KATGRDKAIN EILVSYEEEG WVVCRAFKKR  120
TMQPPRSSIG AWEPSYSYHD PAVFVGGGEH FKQEAAAELD GVAAAAGANA FLRYSTRLAE  180
LPQLESPPLP SQGSQAASAV VDGEEDNADS SRRPGGGGGA AVTTDWRAFD KFVASQLSPE  240
EQHTCRATDD DDMAALLLLD GGGQEDDAGR WLGSAGLLSA VAADATTDCG LGTSCVPGDI  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-2929912105Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539371.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923890.0AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence.
GenBankAC1139480.0AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence.
GenBankAK1063130.0AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankJN6340730.0JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613865.10.0NAC domain-containing protein 105
SwissprotQ9SL411e-77NAC37_ARATH; NAC domain-containing protein 37
TrEMBLQ109C30.0Q109C3_ORYSJ; No apical meristem, putative, expressed
STRINGOS10T0532000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.14e-67vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]