PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539357.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 266aa    MW: 29032.5 Da    PI: 8.395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539357.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-193989155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  KN539357.1_FGP007 39 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 89
                       79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-193998IPR016177DNA-binding domain
CDDcd000183.22E-333999No hitNo description
PfamPF008472.6E-133989IPR001471AP2/ERF domain
SMARTSM003803.5E-3740103IPR001471AP2/ERF domain
PROSITE profilePS5103219.8754097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-284098IPR001471AP2/ERF domain
PRINTSPR003678.8E-84152IPR001471AP2/ERF domain
PRINTSPR003678.8E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MELQFQKPTQ GQSQQQQCHY QVPTVTVAKN KAKTKCSSSK FVGVRQRPSG RWVAEIKDTT  60
QKIRMWLGTF ETAEEAARAY DEAACLLRGS NTRTNFATQA APDSPLASRI RTLLTHKKLK  120
KSMPQPTITF STAVYHHARS TVPTAATSTS TSGVSPSRSN SSSLNFATNL SNFAMSGGEE  180
LQLASSQQQY DQSWALNTSL LPIGDGCDMS GSNACPVASD QDKMKAEKQG SHGMNGIQEQ  240
ETFDMGSDLC DSLWDLPPIC QLSCKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539357.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645889.10.0ethylene-responsive transcription factor ERN1
TrEMBLA0A0D3GNG90.0A0A0D3GNG9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AH290.0A0A0E0AH29_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FR230.0A0A0E0FR23_ORYNI; Uncharacterized protein
TrEMBLA2YJ970.0A2YJ97_ORYSI; Uncharacterized protein
STRINGOGLUM07G06400.10.0(Oryza glumipatula)
STRINGONIVA01G29960.10.0(Oryza nivara)
STRINGOBART07G06690.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-28related to AP2 11