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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN539351.1_FGP002 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 311aa MW: 34060.2 Da PI: 5.2292 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN539351.1_FGP002 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.4 | 4e-11 | 146 | 193 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ + f L +++P + kK +K++ L +++Y+k+L+
KN539351.1_FGP002 146 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 193
5799************************.....9*****************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MDEQNQWLTE PEPEELTYMY HQEEHARMQE QFAGTPLVEQ PVRFDQFYPA SMAPNQFHPS 60 HCSSFPAFGG SSALPSLAFG AVAMTTKKEQ VQQPSPSSSN VLSFAGQVQG SSTTLDFSGR 120 GWQQDDGVGV FQQPPERRSR PPANAQEHVI AERKRREKLQ QQFVALATIV PGLKKTDKIS 180 LLGSTIDYVK QLEEKVKALE EGSRRTAEPT TAFESKCRIT VDDDDGVSAS SGADDGSSSS 240 SSPTVEASIH GSTVLLKICC KERRGLLVMI LSELEKQGLS IINTSVVPFT DSCLNITITA 300 KARLALPVYY S
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 151 | 156 | ERKRRE |
2 | 152 | 157 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC099732 | 0.0 | AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence. |
GenBank | AK288157 | 0.0 | AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |