PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539346.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 476aa    MW: 50350 Da    PI: 8.8768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539346.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054870123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  KN539346.1_FGP001 48 FVCEICNKGFQRDQNLQLHRRGH 70
                       89*******************88 PP
2zf-C2H2120.00063124146123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  KN539346.1_FGP001 124 WKCDKCSKRYAVQSDWKAHSKIC 146
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-74770No hitNo description
Gene3DG3DSA:3.30.160.601.5E-54770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.5E-54870IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0174870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9494870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SMARTSM0035519089119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4112145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-7119144No hitNo description
SMARTSM00355140124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MANARAMRDG EMIDGDGDRS SVRSRGGADP DAEVIALSPK TLLATNRFVC EICNKGFQRD  60
QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG IKKHFCRKHG  120
EKKWKCDKCS KRYAVQSDWK AHSKICGTRE YRCDCGTLFS RVRVLFCLGV HSGWHGYRDA  180
ALDQFATPAP PPPPVTAPPP PPVAAPNDCV SSSSSGVAPT SQSLLSSMFA PPSVAQAPQY  240
ADPIGVGAGG HQERAVPAKP PALCLAPNAS SSLFTAPVPA DRQQFAPPPP PSPSPHMSAT  300
ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS SAPPSSSGQQ QQHHQHHHQE TMQVPLPASS  360
LPEWPPRLQP EPSAMLSSGL GLGLPYDATG GPVSLPELMM GQSTLFSAKP ATLDFLGLGV  420
SPTGASTSRG FPTFIQPIGG AVSLAGSATV AAETFGAAHG GQANPWERNP SSSPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-22120161344Zinc finger protein JACKDAW
5b3h_F4e-22120161344Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539346.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156870.0AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164260.0AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.11e-154protein indeterminate-domain 1
TrEMBLA0A3B6HPZ90.0A0A3B6HPZ9_WHEAT; Uncharacterized protein
STRINGOGLUM03G07180.11e-155(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-93indeterminate(ID)-domain 2