 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KN539343.1_FGP001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HB-other |
| Protein Properties |
Length: 368aa MW: 40869.9 Da PI: 7.5781 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN539343.1_FGP001 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 27.6 | 4.9e-09 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
+ft+ ++ e+e+ ++ n p ++ ++ LA+k ++ +qV +WFqNrR+ ++
KN539343.1_FGP001 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
69*************776999***************************************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP 60
KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG 120
SLESGQVEFE AKSARDGAWY DVAAFLSHRL FESGDPEVRV RFSGFGAEED EWINVRKCVR 180
QRSLPCESTE CVAVLPGDLI LCFQEGKEQA LYFDARVLDA QRRRHDVRGC RCRFLVRYDH 240
DHSEEIVPLR KVCRRPETDY RLQILHAARA AGMAKEAVVD LVSHNDKSSA EQKPPKQHKM 300
MDVNTDEVTM VSNQDQEEPT GKPAATLPAA PVKTLNDSAS ASDVQMGEAQ AAPKVESSDE 360
VEDKMKEG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 4e-47 | 124 | 257 | 1 | 134 | SHH1 SAWADEE |
| 4iur_B | 4e-47 | 124 | 257 | 1 | 134 | SHH1 SAWADEE |
| 4iut_A | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 4e-47 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK104282 | 0.0 | AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-106 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
