PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539336.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 513aa    MW: 57374.2 Da    PI: 5.3679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539336.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.43e-2790191199
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        q+  fw ++   ie ++df +h +P+ar+kki+ +++   mi+ + P++lsk celf+ el++r+w  a++ +r  +  +dia+av++t+ +
  KN539336.1_FGP013  90 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMITFDMPAFLSKMCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESY 181
                        68899*7655669******************************************************************************* PP

              NF-YC  90 dflvdivprd 99 
                        dflvdi  ++
  KN539336.1_FGP013 182 DFLVDILHNH 191
                        *****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.7E-1095175IPR007125Histone H2A/H2B/H3
SuperFamilySSF471136.54E-1797189IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-20114188IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKIHGFQTRF HLHHRAFIEP RAISTYSYVR CNILLYVQYC FEKNVIMFAI KLAISFCGTV  60
YHLEQQREAM EQTLDVHRSL RPPMPMAQQQ MDEFWRDRQK EIEMTKDFSE HMIPMARLKK  120
IVSSQKGNMM ITFDMPAFLS KMCELFVQEL AVRAWACAQS HNRCIILDTD IAEAVASTES  180
YDFLVDILHN HSVKQKSTPC SSTKCCRLVD QPSASHIPHQ HLLPQFAPTY TSAIPITPSL  240
MPLISQCTPS SFPSLPQEMF PLMAPTPIVN RSMLFIDNIA RGLGLQGNNI NAVTNNNILD  300
NIVGCSSPAV LASMMNPALL GPLGAPLNPP NSQSYNCTMD IINSNDACGS NNSSVIVADQ  360
ANIAPSGHFY PITLQSSCPT FLHSNNNDTI TAIPEGVDIS DIMHVTSNVD AATKVFSGQE  420
EQHEKETNIE WHHQNEIYES IDIGIINATT RDGNKCSISW DELGMADDSL LDNFLEELQV  480
RKDDVSDTRI AFNKDPFLDD VVLSNPSTSN SNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-18100188593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539336.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
TrEMBLA0A0E0HH020.0A0A0E0HH02_ORYNI; Uncharacterized protein
STRINGONIVA05G23940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.29e-26nuclear factor Y, subunit C4