PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539290.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 596aa    MW: 63577 Da    PI: 3.8812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539290.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.85.9e-2581481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 
                        lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + +  +++e +fF++++ k+ +gkr++r +   g+W+ +    d
  KN539290.1_FGP008   8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWLLLADHGRGRDEAFFFAEARAKNVRGKRQKRtVEGGGFWQGQRVcvD 99 
                        79****************************99***************877777788********************555599**96654223 PP

                NAM  90 kevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                         e l+       +            + k +L f+ ++ ++g ++ Wvmhey++
  KN539290.1_FGP008 100 GERLRVpgdgggG--GevggeleiEWRKYMLSFF-AEGERG-SSGWVMHEYAI 148
                        3333335666651..0445666657778888999.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-294167IPR003441NAC domain
PROSITE profilePS5100527.5188167IPR003441NAC domain
PfamPF023651.1E-159147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAP PWLLLADHGR  60
GRDEAFFFAE ARAKNVRGKR QKRTVEGGGF WQGQRVCVDG ERLRVPGDGG GGGEVGGELE  120
IEWRKYMLSF FAEGERGSSG WVMHEYAITA PDDLASSPIR LYRVRFSGHG KKRKREPELL  180
GARVHDDDVD GGERAAPRRA VVETALFVQQ PSAMDCAESA DQSFSGAIEP VLPNLPDMMP  240
EQADAGDTAE TTTAVVNLTD AMSEQPVPPL AADGDDQSSY GVIDPAFRDL ADLMVLPPEQ  300
ADAGCADVNQ NYYMALCDFD FTAGAHDGGM ERAAPWPPMS ETTPFEQQGP QLAPAAVVDL  360
PLGNADCADH QSSYGDMIVL PSEQADAGGG AETTEALFDQ PVPPLAADCA NQGSYGVIDP  420
VFRDLADLIV LPPEQADAMD GEAAPAWCDF DFPENIDEAL SYVDFTAGAH TDNDGGVSET  480
AMFEQPGSPP QHDPLPMDAD GADHSSSGAL IDTVFGDHAE PIVLPLEQAD TGGGAAAAVN  540
LMDKQNSSSM DGEAAPAWCD SDFPESIDEV LSYIDFSTDD TSCIDFSMDD LFDLAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539290.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013010.0AK101301.1 Oryza sativa Japonica Group cDNA clone:J033033K06, full insert sequence.
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLQ84YR40.0Q84YR4_ORYSJ; Os07g0457100 protein
STRINGONIVA07G11020.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.14e-08NAC domain containing protein 70