PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539262.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 786aa    MW: 91397.4 Da    PI: 7.7749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539262.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.81.5e-27265360291
               FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                        f+n+YA+ vGFs+++++s+k+   krn+ei+k t++C+++gk+++++k+    ++ +r+t++  rt+Ck+ ++v+++ +g+w +++lel+Hn
  KN539262.1_FGP008 265 FFNFYAYLVGFSIVIAHSYKTsdkKRNNEIIKFTYKCNRHGKNNDKSKEndeeSKGKRKTNVLIRTDCKCVMVVREN-EGVWSIMRLELNHN 355
                        9*******************999999******************999998887778899****************99.************** PP

               FAR1  87 Helap 91 
                        H+l+p
  KN539262.1_FGP008 356 HSLSP 360
                        **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-27265360IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.693567603IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5570603IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MEMEENNLRS EKIVSAREEK TMENCESSNR KEALSSHKQI TVSIQMAGST NPIANWISPV  60
FFRCCFQVCK YRSKNEGTTP PAIPYGEQMM HDEYTLLSSQ PEGEQMSYTA LMQQVIQSQS  120
PKITLQANER GIPGMNYLLQ SPTGFDNSMI LTTNRFHDDY EQIATTTEEE QMNCEHQWTE  180
NDIENIYNNN NDHQQVQIGG IENSMVQQVE EQLQDGIATT EDNASMVHHQ EIENAVEESI  240
TDEIDSRHVP HEGMQFKTDE EAYTFFNFYA YLVGFSIVIA HSYKTSDKKR NNEIIKFTYK  300
CNRHGKNNDK SKENDEESKG KRKTNVLIRT DCKCVMVVRE NEGVWSIMRL ELNHNHSLSP  360
PEERKFLYSH KDMTQEEKSL ILTLKECNIP TRSMVVILAS LRGGLSSLPY TKKDMIEKYN  420
LQNVKYLQIM FKARATCIPV YFKNDWFPFI HSTTLSEGTN ARFKREVGPR HSVTSFLTEH  480
DRINDRIFET IHNNDHNSST KRPKNFWSDY CIEEQACQLY NSEIFKKFQA EMEKTLMLQT  540
AVIQHGKVYL VFPAMNKMKQ EWRPRKYVVV VNLPKEEYSC ICGKFSKDGI LCCHVLKLML  600
ELNVKKIPDK YIIDRWRKTE KKIATNVERS ANNGDNTALR YNILSKRASV ISSKACKKLK  660
AYHYLLEELE KLDKQVDSIL AEDEQNETLL NYNVAVTNQN LDQALQEGST QEEEEIHDPD  720
KANTKGRKSI RRKRIVEKIM EKNKNKKAKK GEQNCAENQQ NSNRSRKQTN RRSKELESSN  780
KKKKIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539262.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881725.11e-113protein FAR1-RELATED SEQUENCE 5-like
TrEMBLC7J7B20.0C7J7B2_ORYSJ; Os10g0490400 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1517079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-23FAR1-related sequence 3