PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539243.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 309aa    MW: 33435.9 Da    PI: 5.2608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539243.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.96.4e-26191541127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        lp Gf F+Ptd++l+   L++k  g++  +++++ +++++i++++P +L  k +k eek  +yfFskr+  ++++kr+ r+++ g W+++g 
  KN539243.1_FGP006  19 LPIGFYFEPTDQDLL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGA 109
                        699************.7799999999954445556**************8345555555455****************************** PP

                NAM  89 dkevlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                          +v+++    +g +vg kktLvf++    +++++kt+W ++e++
  KN539243.1_FGP006 110 VYKVVKSsksgGGYDVGHKKTLVFHQRfpGDKEAVKTNWAIQEFT 154
                        999999766666666**********7544667789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3012162IPR003441NAC domain
PROSITE profilePS5100528.77919172IPR003441NAC domain
PfamPF023655.7E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAPEDGEDG NFGKNKRGLP IGFYFEPTDQ DLLAILEAKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY AKDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG  120
GGYDVGHKKT LVFHQRFPGD KEAVKTNWAI QEFTRIIGPQ NEAYATSQSS SSQLQQGAAA  180
PPNAVGPSNY YGYFASMVPR PSLDRKGKGK APMDCTEQAG GGGCHAASTS TPAPPKGAEY  240
YGCSVAVEDD DEELQKFLQA MVRGEEVEGD GDHAMADERG PQQDSSPVAA ASGSAPADEQ  300
SYLPYLGDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539243.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.11e-109spidroin-2
TrEMBLA0A0D3HDM41e-113A0A0D3HDM4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BAH11e-111A0A0E0BAH1_9ORYZ; Uncharacterized protein
STRINGOGLUM10G09720.11e-112(Oryza glumipatula)
STRINGOBART10G09860.11e-114(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-13NAC family protein