PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539243.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25429.8 Da PI: 5.333 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59 | 1.6e-18 | 7 | 125 | 11 | 127 |
NAM 11 deelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlsk 95 d+el+ + L k++g + l+ v+++++i++++P +L + ++ ee+ +yfFs+ + k+a ++k ++ra++ g+Wk+ + ++++ KN539243.1_FGP001 7 DQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKTVLGSSQLVEV 97 89999.88*********53333456**************83344444443459**998777663335778899********88777777777 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +g vg k ++ fy kg++t+W mhe+ KN539243.1_FGP001 98 GGVPVGRKLSMEFY----VKGVRTNWGMHEFV 125 **************....899*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.354 | 1 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.24E-23 | 7 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-8 | 7 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDPDDWDQEL LDILDDKLRG APLDRALDAV FHDTRILDFH PAKLYGMYAE DEENGYIYFF 60 STIEFKAAKP KQKKWPRRAA QGGRWKTVLG SSQLVEVGGV PVGRKLSMEF YVKGVRTNWG 120 MHEFVRIIGP NIEVADLAVY RLHKLWTNGE KPGDLAADVA KSTNQSGQAS AADYYQTYQY 180 AVSHVQPINF TLFLSIGYYF TCSIRETETA IVICISATAC NLDDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539243.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109904 | 0.0 | AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614522.1 | 1e-122 | uncharacterized protein LOC4348616 | ||||
TrEMBL | A3C4Q0 | 1e-122 | A3C4Q0_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI10G10340.1 | 1e-122 | (Oryza rufipogon) | ||||
STRING | OS10T0413700-01 | 1e-122 | (Oryza sativa) | ||||
STRING | OBART10G09840.1 | 1e-122 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-07 | NAC domain containing protein 3 |