PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539240.1_FGP015
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 348aa    MW: 38231.8 Da    PI: 5.9879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539240.1_FGP015genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.88.9e-06207226120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        + C+ C+k+F+r  n++ H+
  KN539240.1_FGP015 207 FICHVCNKTFNRYNNMQMHM 226
                        89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5203230No hitNo description
PROSITE profilePS5015710.201207234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5207226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED GGGEIQEDHK  60
SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVLEP AVELNIGLPV TGSSAQEVTM  120
EEDDEEEDDD DDVGKEEMDE WKPMHGGCKV EGDEEQYGEA VASVEGSSSI TAVGDMFGGV  180
GAESGVAMSS RYWIPTPAQI LVGPVQFICH VCNKTFNRYN NMQMHMWGHG REYRKGPESL  240
KGTQTLAMLK LPCYCCAAGC KNNTHYKRKH GAKPFRCRRC AKPFAVKGDW RTHEKNCGKR  300
WFCACGSDFK HKRSLNDHVR SFGAHHLPVA ESAAATPADK DRIISFQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539240.1_FGP015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625834.10.0protein TRANSPARENT TESTA 1
TrEMBLA0A0D3EWI20.0A0A0D3EWI2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H6J10.0A0A0E0H6J1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N5950.0A0A0E0N595_ORYRU; Uncharacterized protein
TrEMBLB8ACI20.0B8ACI2_ORYSI; Uncharacterized protein
TrEMBLQ5N7D60.0Q5N7D6_ORYSJ; Putative zinc finger protein
STRINGORUFI01G41290.10.0(Oryza rufipogon)
STRINGONIVA04G25710.10.0(Oryza nivara)
STRINGOBART01G37960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-79WIP domain protein 5