PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539232.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 359aa    MW: 39677 Da    PI: 4.4633
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539232.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-12105200899
                        -HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE. CS
                 B3   8 sdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefe 91 
                        sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d++ +++e
  KN539232.1_FGP002 105 SDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDDDdDDGE 192
                        5555666666666666555776664455565..8999***********..*******************************766677799** PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                        l+v+v+r+
  KN539232.1_FGP002 193 LYVGVRRQ 200
                        *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-9101206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-10104211IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-9109200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAAAAAPLAD DGDGIVDRAM WLACAAPNSA RPPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADYD TLMISDFDFR IRFSAPMADA  120
KGVFPPLVDA KAVQPLLVKD LHGSPMTFDY GRKGKRVTLA KVWKKFRDDM DFVDGDSVIF  180
MRRRDDDDDD GELYVGVRRQ RTLERPLRNT MRRSRPPTPP QAAVQEADGD EFVVPREAVE  240
EGLRARLTSL TEVEFVWAVE DGAPPIVGPR GKVTAIATGQ LWRNLEIVWD GNSEMDMSAN  300
FWQVRPVEEV DISPSTPPPK RLKNCEIDDT ASSSVSVDNG DEQVPTMRQR LEALFPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-181519950258Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539232.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0E0Q4W70.0A0A0E0Q4W7_ORYRU; Uncharacterized protein
TrEMBLA2YIU30.0A2YIU3_ORYSI; Uncharacterized protein
STRINGOS07T0183200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.12e-22auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]