 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KN539226.1_FGP001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 392aa MW: 42981.4 Da PI: 5.89 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN539226.1_FGP001 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 12.6 | 0.00025 | 341 | 380 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L
KN539226.1_FGP001 341 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 380
9******************97...333..3458999999999999 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MTLQVNYSAN QNFPLMQSLK FEIGDLVAGI AVWVSVVAWQ FFQGERAGVL MVWQPVAQTR 60
FRVFKHENGI AVRVIACFQP SQDCQKILFA GCFLMGEKVN PWCHWSNPPW TENSANNLHP 120
PDVSLDNTNS VALPTYLSSD GYIYSGVAAS MPSIAASVTD RPVSFSSRFV TTLVPSVGLS 180
TAETLRKRPL VFFHNENNTF TVGPLLSKGA LDTVPELQGS NETNVTDVGA QDTEYEGCLK 240
VQELNNRVRK YPVQNDTMSV ESVASAGASQ PAKKRRLSSG TDRSVVDTAS SARPDHSVDQ 300
KHLSHDDDAQ SCCIGEVESD HQFALREGEE AEGDDGPDDR KRRRERIQET VAALRKIVPG 360
GIAKDATAVL DEAICYLKYL KLKVKTLGAV SL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC099323 | 0.0 | AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence. |
| GenBank | AK065674 | 0.0 | AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
