PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539183.1_FGP017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 81aa MW: 9082.43 Da PI: 8.3509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.2 | 3.8e-05 | 43 | 62 | 36 | 55 |
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Ave+Ik Lq KN539183.1_FGP017 43 RQTSTADMLDLAVEHIKGLQ 62 459****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-6 | 42 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-6 | 42 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASTSALEMA GMDRYLQLQH DQVPFKVRAK RGCATHPRSI AERQTSTADM LDLAVEHIKG 60 LQSQLQALKH EQEKCTCCSR P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539183.1_FGP017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110833 | 2e-65 | AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence. | |||
GenBank | AP004124 | 2e-65 | AP004124.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1669_F01. | |||
GenBank | AP014958 | 2e-65 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 2e-65 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625725.1 | 2e-47 | transcription factor bHLH128 isoform X1 | ||||
Refseq | XP_015625727.1 | 2e-47 | transcription factor bHLH128 isoform X2 | ||||
Swissprot | Q8H102 | 1e-24 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0D9YUM1 | 8e-53 | A0A0D9YUM1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G23590.1 | 1e-53 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11531 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 5e-27 | bHLH family protein |
Publications ? help Back to Top | |||
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