PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539180.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 274aa    MW: 29683.4 Da    PI: 7.8285
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539180.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.7e-13107166356
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLe......ekvkeLeaeNkaLkkeleelkkev 56 
                        e kr rr+ +NRe+ArrsR+RK+a++ eLe      + v++L++eN++L k+l e +++ 
  KN539180.1_FGP014 107 ETKRIRRMVSNRESARRSRRRKQAQLSELEsqqsiyDQVEQLKGENSSLFKQLTESSQQF 166
                        68***************************944444457************8888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.7601.8E-52466IPR007117Expansin, cellulose-binding-like domain
SMARTSM003382.2E-13105175IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.818107138IPR004827Basic-leucine zipper domain
PfamPF001702.4E-11107165IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-12109166No hitNo description
SuperFamilySSF579595.95E-9109164No hitNo description
PROSITE patternPS000360112127IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASLSSFLLA TAVATLLVIG SYATELTFKV GQGSSTTSLN LVTNVAISEV EVKEKGAGDW  60
TGLKESSDGP KPTTSANHAP ESDSDSDCDS LLEAERSPRL RGTKSTETKR IRRMVSNRES  120
ARRSRRRKQA QLSELESQQS IYDQVEQLKG ENSSLFKQLT ESSQQFNTAV TDNRILKSDV  180
ETLRVKVKMA EDMVARAAMS CGLGQLGLAP LLSSRKMCQA LDMLSLPRND GCGFKGLNLG  240
RQVQNSPVQS AASLESLDNR ISSEVTSCSA DVWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121128RRSRRRKQ
2123128SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539180.1_FGP014
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534740.0AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
GenBankBT1291010.0BT129101.1 Oryza sativa clone RRlibA00185 mRNA sequence.
GenBankCT8328530.0CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643805.11e-118bZIP transcription factor RISBZ5
SwissprotQ654B31e-119RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLA0A0E0E4U91e-146A0A0E0E4U9_9ORYZ; Uncharacterized protein
STRINGONIVA06G27820.11e-117(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-25basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]