PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539151.1_FGP017
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 2011aa    MW: 220154 Da    PI: 6.8704
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539151.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.83.3e-4781382128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +pGfrFhPt+eelv +yL++kv g++ +   +i+evd++++ePwdL +  +++++  +yfFs +d+ky++g+r+nrat++g+Wkatg+dk+v
  KN539151.1_FGP017   8 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLHSIEPWDLLQGQQHDQEyYCYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKPV 97 
                        79************************666..8**************743333333366********************************** PP

                NAM  93 lsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                        ls+  +        +g++ktLvfy+grap+g+ktdW++heyrl
  KN539151.1_FGP017  98 LSSsrS--SsspavIGMRKTLVFYRGRAPNGSKTDWIIHEYRL 138
                        **8551..245556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-503159IPR003441NAC domain
PROSITE profilePS5100552.2397159IPR003441NAC domain
PfamPF023653.7E-249138IPR003441NAC domain
Gene3DG3DSA:1.25.10.104.3E-78381004IPR011989Armadillo-like helical
SuperFamilySSF483718.28E-8839993IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.3E-711901212IPR011989Armadillo-like helical
SuperFamilySSF483718.28E-811981213IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.3E-713151420IPR011989Armadillo-like helical
SuperFamilySSF483718.28E-813151388IPR016024Armadillo-type fold
SMARTSM006677.6E-414481480IPR006594LIS1 homology motif
PROSITE profilePS508969.56314481480IPR006594LIS1 homology motif
SuperFamilySSF509789.87E-1617731957IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.4E-1417741956IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.917751814IPR001680WD40 repeat
SMARTSM003203.418171857IPR001680WD40 repeat
SMARTSM003207.318621900IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complex
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 2011 aa     Download sequence    Send to blast
MEEWCCVAPG FRFHPTEEEL VGYYLARKVV GQQDDGIIQE VDLHSIEPWD LLQGQQHDQE  60
YYCYFFSYKD RKYPSGTRTN RATAAGFWKA TGRDKPVLSS SRSSSSPAVI GMRKTLVFYR  120
GRAPNGSKTD WIIHEYRLVV ADHHQQDGSC WVVCRAFRKP TATLQHQLHL HRPPPLLHHP  180
GYYDDQYLYP PPPAAAAGGG GLLCSPALDM ELEDEKDDSK MMILNNDNIP LVKEKRFLSF  240
IKWSSNSTPR HGEDRTDHEF TSVAGDEEAE SGVAERSVEV DRELVRVEAI DDIALEREFR  300
RLDENSVVTI ILRVVELEDN PNPRLLHTLA TICEAHEARY AQECANSPSY NNTNARNSHT  360
IGKLANLLRE NDDFYELVFC KFLSDNSYSA AVRSAAARLL LSCYSAWTPQ YPHAFEDAIV  420
ENIKKWVTED GGASNECESK HLGKNNKPTD ADMLRTYAIG LLAMALCGGG QLVEDVLTMG  480
VSAKLMHFLR VRVHGDVASA QKDSNIPLDT KHPRSRDENR NKSRLVQDSS RLDGMRSGDG  540
ISIDPTSENC DNVMGMRHAH GERWIDDAAS LQPERADSSL DLFDAMEAGA TNDRTYSASI  600
CDTKSRVGER LSALRPGRDE EMNENTRDDL LKRKLSRTGS RLRGKSKAGE SLPESERTPL  660
SPTSGLKIGT RTSREKNMVR IEDANKAIDV NNSSPGIEPF NAISKEEYED RFKDCIIGLK  720
DISDIVLKAV RAAEAEARSA NAPDEAVKAA GDAAAELVKS AASEVWKTGN NGDAVVLAAE  780
KAAATVVDAA MSTSVSRSNQ VGEEHVVEEP VQISEDHELE DFVITDHGQL LQLREKYSIQ  840
CLQILGEYVE ALGPVLHEKG VDVCLALLQR SIKDQGGHGH FTLLPDVLRL ICALAAHRKF  900
AALFVDRGGI QKILSVPRIA QTYTALSACL FTFGSLQSTM ERICALSSDT LNNVVELALQ  960
LLECPQDSAR KNAAIFFAAA FVFKAILDSF DAKDGMQKVL GILHGAASVR SGGNSGALGS  1020
SNVNQGNDRS PAEVLTASEK QVAYHSCVAL RQYFRAHLLQ LVDSIRPSKS IRSIARNTSS  1080
ARAGYKPFDI GNEAMDAVFR QIQRDRKLGP ALVRARWPVL DKFLASNGHI TMLELCQAPP  1140
TDRYLHDLTQ YAFGVLHITT LVPYCRKLIV HATLSNNRVG MSVLLDAANS FGYVDPEVIC  1200
PALNVLVNLV CPPPSISNKS SSTGNQQPAA TQAVGGAFSE NRDRNAEKCT TDRNLTANQG  1260
ESRERCGDGN TSQQGNTVQI STPVVPSGVV GDRRISLGVG AGGPGLAAQL EQGYRQAREV  1320
VRANNGIKIL LQLLSSRMVT PPVAIDPIRA LACRVLLGLA RDDAIAHILT KLQVGKKLSE  1380
LIRDTSGQSI GGDNSRWQNE LTQVAIELIA VLTNSGKETT LAATDAAAPA LRRIERAGIA  1440
AATPVSYHSR ELMQLIHEHL LGSGFTATAA MLQKEADLAP LPSTAAVTPV HQVAALETSS  1500
AQQQWPSGRA QGFVPDTTKV TTDQTGQRSD SVLPSSKKKS LSFSSSFSKR TQPSHLFSGN  1560
RASNSLKSPV PIGNVDNMIC AASTVNTGDA ETSHKTPLSL PQKRKLVDMK DLSSASAAKR  1620
PAMVDQACQS PVFQTPAPTR RGLSVAVDSP AASFHSGRPN FYNIYTENLD DSQGTPGATI  1680
TTPHHGASDQ QSVNLERMTL DSLVVQYLKH QHRQCPAPIT TLPPLSLLHP HVCPEPSRSL  1740
SAPANIAARM GSREIRRQFS GIQIPRRDRQ FIYSRFKLCR VCRDESSLLT CMTFLGDASR  1800
VAAGNHTGEL RIFDCNTANI LETQTCHQQL VTIVESASSG GNELILTSSL NEVKVWDAFS  1860
VSGGPLHTFE GCKAARFSHS GTSFAALSTD TTRREVLLYD VQTYNLDLRL PDNSGYSGGR  1920
GYVQPIIHFS PSDTMLLWNG VLWDRRSPNP VHQFDQFTDY GGGGFHPAGN EVDFLFLNLF  1980
VILLVYNSVH FRAWASRDLL PLLQSRNFLN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-40915917168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539151.1_FGP017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634942.10.0DDB1- and CUL4-associated factor homolog 1
TrEMBLA0A0E0DKH80.0A0A0E0DKH8_9ORYZ; Uncharacterized protein
STRINGOMERI04G25470.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.12e-57NAC domain containing protein 76