PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539135.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 263aa    MW: 29114.9 Da    PI: 7.6257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539135.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-1599143347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+++++++ +qlG+g+W+ I++ + + Rt+ q+ s+ qky
  KN539135.1_FGP005  99 PWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKY 143
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.87892148IPR017930Myb domain
SuperFamilySSF466894.24E-1893148IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1895147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.3E-1296142IPR009057Homeodomain-like
SMARTSM007179.3E-1296146IPR001005SANT/Myb domain
PfamPF002497.4E-1399143IPR001005SANT/Myb domain
CDDcd001671.25E-1099144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEQHEEASER KPSPPVMFRL FGVEVRGGGG GVDEEYEEEE VEGGLFIKKS SSMPNLTSID  60
PLPVPADGGK RRASDDSELA PGQQKRRRRK VQERKKGVPW TEEEHKKFLE GLRQLGKGDW  120
RGISKNFVTS RTATQVASHA QKYFLRQTNP GKKKRRASLF DVVAECSDDQ LPSPQSVGTK  180
PPTQDIIHTD RGDVPILSYP VARGFRGDSV QVDELTEYVK RLKAAEDMSL SMISGLEMAS  240
SSISSLELSI APPHCAIEAI KVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16989KRRASDDSELAPGQQKRRRRK
28489KRRRRK
38495KRRRRKVQERKK
48595RRRRKVQERKK
5151155KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539135.1_FGP005
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889860.0AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612867.11e-158transcription factor MYBS2
SwissprotB8BI931e-159MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-159MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A0D3HGM51e-157A0A0D3HGM5_9ORYZ; Uncharacterized protein
TrEMBLI1QVZ11e-157I1QVZ1_ORYGL; Uncharacterized protein
STRINGORGLA10G0137400.11e-158(Oryza glaberrima)
STRINGOBART10G18600.11e-158(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-31MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]