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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | KN539116.1_FGP007 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1659aa MW: 180749 Da PI: 5.4966 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 30.5 | 8.2e-10 | 58 | 99 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT E +ll+++v ++G + W++Ia+++ ++ +c+ r+ +
KN539116.1_FGP007 58 AWTDAETLLLLEGVLKHGDD-WDLIAQHVR-TKNKSECIARLIQ 99
8*****************88.*********.999999*999865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51293 | 20.211 | 54 | 105 | IPR017884 | SANT domain |
| SuperFamily | SSF46689 | 4.37E-9 | 54 | 106 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.3E-8 | 55 | 103 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 56 | 96 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 4.4E-9 | 58 | 99 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 3.71E-7 | 58 | 96 | No hit | No description |
| Pfam | PF16495 | 8.7E-8 | 279 | 316 | IPR032451 | SMARCC, C-terminal |
| Pfam | PF05477 | 6.8E-25 | 382 | 528 | IPR008833 | Surfeit locus protein 2 |
| Gene3D | G3DSA:3.80.10.10 | 1.5E-44 | 614 | 898 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF08263 | 1.7E-10 | 617 | 657 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
| SuperFamily | SSF52058 | 1.16E-40 | 645 | 938 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF13516 | 0.44 | 690 | 708 | IPR001611 | Leucine-rich repeat |
| SMART | SM00369 | 28 | 690 | 715 | IPR003591 | Leucine-rich repeat, typical subtype |
| SMART | SM00369 | 380 | 716 | 740 | IPR003591 | Leucine-rich repeat, typical subtype |
| SuperFamily | SSF52058 | 3.23E-48 | 845 | 1129 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00369 | 26 | 854 | 878 | IPR003591 | Leucine-rich repeat, typical subtype |
| Gene3D | G3DSA:3.80.10.10 | 7.2E-51 | 906 | 1140 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00369 | 380 | 954 | 979 | IPR003591 | Leucine-rich repeat, typical subtype |
| SMART | SM00369 | 17 | 1003 | 1031 | IPR003591 | Leucine-rich repeat, typical subtype |
| SMART | SM00369 | 35 | 1126 | 1147 | IPR003591 | Leucine-rich repeat, typical subtype |
| Gene3D | G3DSA:3.80.10.10 | 6.9E-40 | 1153 | 1434 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 2.72E-52 | 1235 | 1409 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 3.23E-48 | 1253 | 1329 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.4E-25 | 1435 | 1452 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 2.72E-52 | 1486 | 1607 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.4E-25 | 1496 | 1589 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00369 | 43 | 1516 | 1539 | IPR003591 | Leucine-rich repeat, typical subtype |
| Pfam | PF13855 | 6.7E-9 | 1518 | 1577 | IPR001611 | Leucine-rich repeat |
| SMART | SM00369 | 31 | 1540 | 1564 | IPR003591 | Leucine-rich repeat, typical subtype |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1659 aa Download sequence Send to blast |
MAPICGLCGM ECRDGNAQIL KDGFKVCSKC YANNDNKGEA NIHPGDKKER IDNHSSSAWT 60 DAETLLLLEG VLKHGDDWDL IAQHVRTKNK SECIARLIQL PFGEHMLGTV NGKLDYRLHK 120 IQTTDGKVNK STVKESSSQP TETVDDMQID GNEDGADKSV EEHPTKHRRL FSSIDTTVSL 180 MEQLAHLTTS TSPDVVAAAA DAAIKALGNE NPQARRAFQL SEKEYQTRAF SSNHARQRDY 240 CSDDVGGGDR DVEMHGHPDK KQGKMFISTA YQVRAAVATS IGVAAARAKM LADQEEREME 300 LLMASIIETQ VKSLDLFLFT SAATEGHAPP FPPTRRRQPK TPPLLDSRFP LTSRATSPLP 360 VLRLRTRGCS RDVESSMLCC RSKLICNITG DIINKSEEHI WKHINGKRFL NKLEKLEEKM 420 ASGEMAEGEA EQSNEGEKKT KSRKKKDKKK AAVVNPSLPR EPKPEIDDSD NSDDPDFWVP 480 PVGSRWDDDD GKDRWTSSPV KDKDDAAEDE DGDDDGDDMA DKDDEETREI ASSPIAAPFS 540 GKLETHEQYC KGLHEHAIAG FRHHQTPACS LALARTPFFF YMERLRTSRI HVYGFIILLL 600 LLLLVQATAA ATSRCPAQQA AALLRLKRSF HHHHQPLLLP SWRAATDCCL WEGVSCDAAA 660 SGGGVVTTLD LGGHGVQSPG GLDGAALFQL TSLRRLSLAG NDFGGAGLPA SGLEGLAELT 720 HLNLSNAGFA GQIPIGVGSL RELVSLDLSS MPLSFKQPSF RAVMANLTKL RELRLDGVDM 780 SAAAGDWCDV LAESAPKLQV LTLKSCKLSG AICSSFSRLR SLAVVDLSYN QGFSDASGEP 840 FALSGEIPGF FAELSSLAIL NLSNNGFNGS FPQGVFHLER LRVLDVSSNT NLSGSLPEFP 900 AAGEASLEVL DLSETNFSGQ IPGSIGNLKR LKMLDISGSN GRFSGALPDS ISELTSLSFL 960 DLSSSGFQLG ELPASIGRMR SLSTLRLSEC AISGEIPSSV GNLTRLRELD LSQNNLTGPI 1020 TTINRKGAFL NLEILQLCCN SLSGPVPAFL FSLPRLEFIS LMSNNLAGPL QEFDNPSPSL 1080 TSVYLNYKQL NGSIPRSFFQ LMGLQTLDLS RNGLSGEVQL SYIWRLTNLS NLCLSANRLT 1140 VIADDEHIYN SSSSASLLQL NSLGLACCNM TKIPAILRSV VVNDLDLSCN QLDGPIPDWI 1200 WANQNENIDV FKFNLSRNRF TNMELPLANA SVYYLDLSFN YLQGPLPVPS SPQFLDYSNN 1260 LFSSIPENLM SRLSSSFFLN LANNSLQGGI PPIICNASDL KFLDLSYNHF SGRVPPCLLD 1320 GHLTILKLRQ NKFEGTLPDD TKGGCVSQTI DLNGNQLEGK LPRSLTNCND LEILDVGNNN 1380 FVDSFPSWTG ELPKLRVLVL RSNKFFGAVG GIPVDNGDRN RTQFSSLQII DLASNDFSGS 1440 LQLQWFDSLK AMMVTREGDM RKALENNLSG KFYRDTVVVT YKGAATTFIR VLIAFTVIDF 1500 SDNAFTGNIP ESIGRLTSLR GLNLSHNAFT GTIPSQLSGL AQLESLDLSL NQLDGEIPEV 1560 LVSLTSIGWL NLSYNRLEGA IPQGGQFQTF GSSSFEGNAA LCGKPLSIRC NGSNAGPPSL 1620 EHSESWEART ETIVLYISVG SGFGLGFAMA FLFQVFRGK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4mn8_A | 3e-67 | 649 | 1609 | 37 | 771 | LRR receptor-like serine/threonine-protein kinase FLS2 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 442 | 447 | RKKKDK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN539116.1_FGP007 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK119334 | 0.0 | AK119334.1 Oryza sativa Japonica Group cDNA clone:001-131-C04, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015634426.1 | 0.0 | receptor like protein 27 | ||||
| TrEMBL | A0A0D9ZM71 | 0.0 | A0A0D9ZM71_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM04G16180.1 | 0.0 | (Oryza glumipatula) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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