PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539106.1_FGP020
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 764aa    MW: 85983.3 Da    PI: 9.0325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539106.1_FGP020genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.73e-21335420190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  KN539106.1_FGP020 335 RFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTtENQWEVVFVELEHNHPCN 420
                        5****************99988..9999**************99887...8999******************9***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092703.92E-4714272IPR019024Ribonuclease H2, subunit B
PfamPF094682.3E-2714274IPR019024Ribonuclease H2, subunit B
PfamPF031013.0E-19335420IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.742506542IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-6514538IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MASWCGDLAA PPRLLVAPRP SDGNCQGNVL SLRHPRSDEE TGYLFIDGQL HEFNWFKERF  60
GSWFLGDYVC EDGSLYYCTV VDPIFILLPI LKAARMSNGK DPGKFRQLDE ILYVEGYPGY  120
QHLMGIAGNH IDLVCEVKEV ANVKFFRLDD SKVLSWLCCK FRKYSYESHI QVHNLKEVFP  180
KLGKNYAAQG EKELLKDAVQ IIREYLNDEP WLTLLCKKLQ LDIKDIIEAN KTSEASFCAE  240
NSPVPFRPAE EKLGSSSTRS SKGRPAKKQK AEVSDCPSAD VMDTHHSDQY AKSSLQLQFR  300
DTSVSFENNN SVLDKHDITS PQVGMTFETA DLAYRFYLEY GYRAGFGVSK RTSHSVDGVK  360
YRATFVCYKG GIARIKPGLK ARRRLVAKTG CKAMMVVKYN TTENQWEVVF VELEHNHPCN  420
PEMVRFMMCF KDLPDWQREH RPFNAKTRLN PKIHSGRGRP PNQNKDFMVK KTFSQSNYSI  480
EAAGKAGKLR FAEGDVEALL ERKYDYKVMY NSAEKEVWCI CRSFQFKGIL CSHALAVLRQ  540
ELVMLIPYKY ILDRWRKDYK CPEESKETPI SPKAIKATGK GTKPENARED KVDNLYKHGH  600
QYFADIVEMG ATDPDAMEYV LSVMKEAKEK VRKFEESRKD RRPGDSPVST GKRSSKSSRP  660
SNEDGGNGIS DSTPATTTVA TVAVATSTTM QATPTMVAIA PTSATVPAGM FLVPMHPHPM  720
VFPPFTPAVP PVVAPAVPPP APAANVGDVA SNSTRKREKR KGNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539106.1_FGP020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1014780.0AK101478.1 Oryza sativa Japonica Group cDNA clone:J033041A08, full insert sequence.
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-17FAR1-related sequence 6