PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539105.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 327aa    MW: 36034 Da    PI: 4.844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539105.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.96.7e-2611371127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatg 87 
                        +p+G+ F P+d el     +k v+g+    l++v+++++i++++P  L+ + + +ee+  +yfFs+r+ +++  +++r++r++k g+Wka+g
  KN539105.1_FGP002   1 MPVGYYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFTTKagNKRRPTRVAKGGTWKASG 92 
                        699************7766666666653334566999***********8445555555356999999865553378899************* PP

                NAM  88 kdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                         +k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  KN539105.1_FGP002  93 GSKTVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 137
                        ******99888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.5891171IPR003441NAC domain
SuperFamilySSF1019411.06E-311152IPR003441NAC domain
PfamPF023653.4E-142137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MPVGYYFVPK DLELFAILRC KLVRGQLPGA LNNVFEHIRI LEFHPALLHE TYIGNEEDGY  60
IYFFSRRQFT TKAGNKRRPT RVAKGGTWKA SGGSKTVRSK KVGGIDVGQK LTMVFYERRF  120
EGDRNPIKTN WGMHEFTKII DGTKNQPVQH DGYLGMAADP TSYVLEHLLP TAAIPPEPMT  180
PPTSSPAPPP AVDHHHRLSP PHDAAGSNYN HPELADYNGG VQEQHEHQYH PQEPQASLVD  240
GEDGYSAMAG GDDAQLGGAE LDTERIAEMV NHIMDGEFEF KFEDNTVLKY NEVFPDNDGV  300
VAAPMMIDGG GDGDGADGGD GDDPFDN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539105.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-96NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0QYP11e-177A0A0E0QYP1_ORYRU; Uncharacterized protein
STRINGORUFI10G09270.11e-178(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-13NAC family protein