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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539097.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 738aa MW: 81129.7 Da PI: 7.6736 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.2 | 1.4e-13 | 68 | 122 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t +q e+Le +F + +p+ ++++L++ +gL +qVk+WFqN+R++ k KN539097.1_FGP005 68 RRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVK 122 445789*********************************************9877 PP | |||||||
2 | START | 88.8 | 1.2e-28 | 222 | 437 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla...kaet 81 la a+ +l+ +a++ ++W+ ++ e +n++ + q + +++ +++ea ra+ +v m+ +v l+d + + ++ + ++ KN539097.1_FGP005 222 LAKNAMHALIILAESHVALWFPVPgcsyEVLNKMAYDQAYPGDNSanaigFKTEATRAVSMVMMDYKSVVDFLMDPY-NYRTFFPeviSGAV 312 6788999999**************999988888888888866666888999****************6665555555.55555554449999 PP EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +++i + g++qlm+ e++++splvp R+ +f+Ry+ l++g v+ dvS+d + + ++++ pSg+li++ + +kvt KN539097.1_FGP005 313 TNRIYTWptsdgynGVIQLMTVEMMFPSPLVPaRKCTFLRYCNVLNEGLVVVIDVSLDDGSIFS------KCRKMPSGFLIQSIRPNSCKVT 398 999977777789*********************************************9988866......7********************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +ehv ++ +h+l+++ ++ gl++ga++wvat+ rq + KN539097.1_FGP005 399 AIEHVLADDTGVHELYQPCMN-GLVFGARRWVATMARQSA 437 ******************985.89***********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 58 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-15 | 59 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.268 | 64 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-12 | 65 | 124 | No hit | No description |
SMART | SM00389 | 3.5E-10 | 66 | 128 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-11 | 68 | 122 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 18.551 | 212 | 441 | IPR002913 | START domain |
CDD | cd08875 | 1.23E-93 | 216 | 437 | No hit | No description |
SMART | SM00234 | 1.7E-7 | 221 | 438 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-21 | 222 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.21E-20 | 271 | 436 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MEMNQQHNEG NESFVALMNG VAGDGTATLP NDGEQSMSIP ARELFAAIEA DSGLLPGNSS 60 NTNEKRKRRL QRLTGKQSEV LEGFFSICGH PDDGQKRHLS ETTGLGLDQV KFWFQNKRTQ 120 VKTMCWKEEN YKLSVENEIL RDENRRVKIA HCTAICLTCR NSSVQNQLAV EMERLMGQSE 180 WLQQEIARSN GTPPAANLAF QLNSSADYVF SGQHDQQMIA ELAKNAMHAL IILAESHVAL 240 WFPVPGCSYE VLNKMAYDQA YPGDNSANAI GFKTEATRAV SMVMMDYKSV VDFLMDPYNY 300 RTFFPEVISG AVTNRIYTWP TSDGYNGVIQ LMTVEMMFPS PLVPARKCTF LRYCNVLNEG 360 LVVVIDVSLD DGSIFSKCRK MPSGFLIQSI RPNSCKVTAI EHVLADDTGV HELYQPCMNG 420 LVFGARRWVA TMARQSARMR DVHHNKTAPQ VSTKGRKNLM KLADDLLASF AGGIAATGGG 480 TCTVVIGAGT EKDIRVAYRR TTEGSSSYNA ILSVSASLRL PLPMRKTFDL LRNLTHRCKW 540 DVLVHGSVVK EEVTIARGVG NDDTVTVLHC KVPHHKPSLP PPAISRAVLR LTPTMCGVDQ 600 RAGREDRGRT MILQNNGYDP SGSFMVYSQI DSELMNTMVL SPSDLPPGRG GPSLYPNGFS 660 LLPDVEAAQD SSGIALGEVG GTLMTMGFQI PVKLASGDRM YSRSAASAIR LMTDTIALVK 720 KTLMNEHSGI YGVSPFHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539097.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF317882 | 0.0 | AF317882.1 Oryza sativa transcription factor 1 (TF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632244.1 | 0.0 | homeobox-leucine zipper protein TF1 | ||||
Swissprot | Q5ZAY0 | 0.0 | TF1_ORYSJ; Homeobox-leucine zipper protein TF1 | ||||
TrEMBL | A0A0D9YFZ6 | 0.0 | A0A0D9YFZ6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G37810.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10475 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 2e-98 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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