PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539069.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 311aa    MW: 34650.4 Da    PI: 8.9218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539069.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41e-30101318128
                NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                        hPt+ elv +yL +++ + +l+  e+i +v+i++++Pwd+     ++ek  yfF++++ k + ++r+nr+t++g+W++ g++k+v+ +  + 
  KN539069.1_FGP010  10 HPTEGELVFHYLYRRAVNMPLPS-EFICDVNILRHNPWDIV---PEREKGKYFFMQKEIKCPGSRRSNRITSKGFWRSAGSEKPVYYSqgG- 96 
                        9********************99.89**************4...4578999***********************************98551. PP

                NAM  98 el.....vglkktLvfykgrapkgektdWvmheyrl 128
                               vg+++tL+fy g+++++e+t+W m+e+rl
  KN539069.1_FGP010  97 -GsdcmlVGMRRTLTFYLGNSRTAERTKWGMQEFRL 131
                        .234566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.7143169IPR003441NAC domain
SuperFamilySSF1019419.94E-349141IPR003441NAC domain
PfamPF023657.0E-1610131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHLPAVGMSH PTEGELVFHY LYRRAVNMPL PSEFICDVNI LRHNPWDIVP EREKGKYFFM  60
QKEIKCPGSR RSNRITSKGF WRSAGSEKPV YYSQGGGSDC MLVGMRRTLT FYLGNSRTAE  120
RTKWGMQEFR LAGNGLSPYP VMKHATGDGS KPPCNCAETT IAKCTIVRFS FGKWGGGFNK  180
YDEPSSRYNS HVDFIHGKEK RNDGLSAVLR NVLAVTPLVE TVVEPDGSWL ICRIYRTRQR  240
ALPVIAPPAI ENARETIIPL ANGNAREGQV RFIDFLRQGS HIESSSPCSC IVGPSLAEGS  300
DESAGSVDQK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-20113113140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539069.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-102NAC transcription factor 25
TrEMBLB8BKP90.0B8BKP9_ORYSI; Uncharacterized protein
STRINGOMERI11G11780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-28NAC domain containing protein 83