PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539069.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 282aa    MW: 31049.4 Da    PI: 7.7547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539069.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.7e-33181481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lp+G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi  ++Pwd+   + ++++  +fF+++++++++++++n a+ +g+W+  g++ ++
  KN539069.1_FGP007  18 LPVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV-PAGEKKNGKHFFTRKENSHPRDHESNHAAGDGFWRLAGTEVPI 107
                        799***************************.99**************5.455667899********************************** PP

                NAM  93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++k     +++lvg+k+tLvf+  ++++ e+t Wvm+e+rl
  KN539069.1_FGP007 108 YNKpsggaDEKLVGMKRTLVFHFRKSSSIERTGWVMQEFRL 148
                        ***999988889**********9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3415158IPR003441NAC domain
PROSITE profilePS5100533.5518214IPR003441NAC domain
PfamPF023659.4E-1819148IPR003441NAC domain
SuperFamilySSF1019411.44E-34202214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGPGVCINL LNGTTMHLPV GCVFRPTEGE LVVNYLYRRA MQEPLPCDFI TDVDIQCHNP  60
WDIVPAGEKK NGKHFFTRKE NSHPRDHESN HAAGDGFWRL AGTEVPIYNK PSGGADEKLV  120
GMKRTLVFHF RKSSSIERTG WVMQEFRLAG ASLVPCLVMR PATGDVFMPP CGCTETTTTK  180
KNNGSLSAAH THAPLVETMV EPDNSWMICR IYKKRQRAPQ VIIPPSIGNA REAVLAVPAI  240
GNAGDRQVNF IDFPGHRCFE EGSDESANVI TKDKGSDGYG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-191614813140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539069.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.11e-126PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA2ZEM10.0A2ZEM1_ORYSI; Uncharacterized protein
STRINGOBART11G14720.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.16e-26NAC domain containing protein 47