PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539069.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 296aa    MW: 32551.8 Da    PI: 6.8401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539069.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.3e-31191419128
                NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                        Pt+ +lvv+yL++++ ++++++ ++i++vd+++++Pwd+   ++++++  +fF++++++   ++r+nra+ +g+W+  g++ +v++k     
  KN539069.1_FGP004  19 PTNADLVVHYLHRRAIQEPVPC-DFITNVDVLQHNPWDIV-PAEEKTNGKHFFIHEENERLGNHRSNRAAGDGFWRPAGSEVPVYHKrsgga 108
                        9*********************.99**************5.455677899*********999************************988777 PP

                NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++lvg+k+tLvf+ g+++++++t+Wvm+e+rl
  KN539069.1_FGP004 109 DEALVGMKHTLVFHYGNSSSAKRTEWVMQEFRL 141
                        7777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.42811169IPR003441NAC domain
SuperFamilySSF1019416.93E-3018145IPR003441NAC domain
PfamPF023651.5E-1419141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASPGVCINL VNGTTTRLPT NADLVVHYLH RRAIQEPVPC DFITNVDVLQ HNPWDIVPAE  60
EKTNGKHFFI HEENERLGNH RSNRAAGDGF WRPAGSEVPV YHKRSGGADE ALVGMKHTLV  120
FHYGNSSSAK RTEWVMQEFR LAGATLIPCP VMRPATGDGS ILPCHRTGTT IATRHNSYGI  180
NKILDFIEMQ KEENNGSPSA GQTHGPLEKT MVEPDSSLRI CRIYKKRQRT PQFIIPPSIG  240
DARELILALP TIGNTRVVAL AVPAIDFLGQ PSFEEGSDVS ADVITDDKDG YGHGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-171914123140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539069.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420100.0AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence.
GenBankEU8470010.0EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.10.0NAC transcription factor NAM-1
TrEMBLA0A0E0BJF10.0A0A0E0BJF1_9ORYZ; Uncharacterized protein
STRINGORUFI11G15720.10.0(Oryza rufipogon)
STRINGOS11T0512100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-23NAC domain containing protein 83